Cebus albifrons polyomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus

Average proteome isoelectric point is 5.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K7QLH5|K7QLH5_9POLY Minor capsid protein OS=Cebus albifrons polyomavirus 1 OX=1236392 PE=3 SV=1
MM1 pKa = 7.12GAVLAVLAEE10 pKa = 4.16VFEE13 pKa = 4.57LASVTGLSVDD23 pKa = 4.64AILSGEE29 pKa = 4.2AFTTAEE35 pKa = 4.35LLQAHH40 pKa = 7.43IANLVTVGGLTEE52 pKa = 4.49AEE54 pKa = 3.83ALAATEE60 pKa = 4.37VTAEE64 pKa = 4.26AYY66 pKa = 9.13AALTSITSTFPQAFAALAATEE87 pKa = 4.1LTATGSLTVGAAVAAALYY105 pKa = 8.99PYY107 pKa = 9.42TYY109 pKa = 11.04DD110 pKa = 4.21HH111 pKa = 6.41STPLANLNTNMALQVWIPDD130 pKa = 3.65LDD132 pKa = 4.16LDD134 pKa = 4.32FPGVRR139 pKa = 11.84PFVRR143 pKa = 11.84FVNYY147 pKa = 9.59IDD149 pKa = 3.91PAQWATDD156 pKa = 3.61LFQAVGRR163 pKa = 11.84YY164 pKa = 7.31FWQTAQRR171 pKa = 11.84YY172 pKa = 5.77GQNLIEE178 pKa = 4.6HH179 pKa = 6.88EE180 pKa = 4.09LRR182 pKa = 11.84EE183 pKa = 4.28TSRR186 pKa = 11.84EE187 pKa = 4.0LAVTAVTSVSDD198 pKa = 3.1VLARR202 pKa = 11.84YY203 pKa = 9.57FEE205 pKa = 4.07TARR208 pKa = 11.84WAVSLLPRR216 pKa = 11.84NIYY219 pKa = 10.11QSLQNYY225 pKa = 6.9YY226 pKa = 10.53QEE228 pKa = 5.27LPPLNPIQVRR238 pKa = 11.84QLQRR242 pKa = 11.84RR243 pKa = 11.84IGGTIPDD250 pKa = 4.12RR251 pKa = 11.84LTFHH255 pKa = 7.14DD256 pKa = 4.92TIQTAEE262 pKa = 4.16YY263 pKa = 9.86VEE265 pKa = 4.43KK266 pKa = 11.24AEE268 pKa = 4.63APGGANQRR276 pKa = 11.84VAHH279 pKa = 6.83DD280 pKa = 3.62WLLPLLLGLYY290 pKa = 10.75GDD292 pKa = 5.13ISPSWEE298 pKa = 3.97STLEE302 pKa = 4.04DD303 pKa = 4.22LEE305 pKa = 4.52EE306 pKa = 5.02EE307 pKa = 4.01EE308 pKa = 6.13DD309 pKa = 3.83APQKK313 pKa = 10.67KK314 pKa = 9.32KK315 pKa = 10.48RR316 pKa = 11.84KK317 pKa = 8.98KK318 pKa = 10.4SKK320 pKa = 10.52

Molecular weight: 35.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K7QLH5|K7QLH5_9POLY Minor capsid protein OS=Cebus albifrons polyomavirus 1 OX=1236392 PE=3 SV=1
MM1 pKa = 7.89DD2 pKa = 3.6HH3 pKa = 6.91TLTRR7 pKa = 11.84DD8 pKa = 3.26EE9 pKa = 5.01SKK11 pKa = 11.4LLMEE15 pKa = 5.29LLNLPMEE22 pKa = 4.45QYY24 pKa = 11.86GNFPLMRR31 pKa = 11.84KK32 pKa = 9.49AFLQKK37 pKa = 10.55CKK39 pKa = 10.03ILHH42 pKa = 6.38PDD44 pKa = 2.98KK45 pKa = 11.56GGDD48 pKa = 3.43QEE50 pKa = 4.41TAKK53 pKa = 10.37MLISLYY59 pKa = 10.35KK60 pKa = 9.96RR61 pKa = 11.84LEE63 pKa = 4.18AEE65 pKa = 4.28VQSLNTDD72 pKa = 3.4DD73 pKa = 6.37CFTTDD78 pKa = 3.41QVCEE82 pKa = 3.83ISNMIFLKK90 pKa = 10.43DD91 pKa = 3.06WRR93 pKa = 11.84TCRR96 pKa = 11.84MGSVKK101 pKa = 9.31CTCLFCLLKK110 pKa = 10.49RR111 pKa = 11.84EE112 pKa = 4.74HH113 pKa = 6.19KK114 pKa = 9.7QQLIGRR120 pKa = 11.84PKK122 pKa = 9.67VWGTCYY128 pKa = 10.5CFNCYY133 pKa = 9.79ILWFGLEE140 pKa = 3.73HH141 pKa = 6.69TYY143 pKa = 10.86DD144 pKa = 4.34IFLSWKK150 pKa = 9.6ALIAITPFRR159 pKa = 11.84NLNII163 pKa = 4.04

Molecular weight: 19.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1495

163

659

373.8

42.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.421 ± 2.057

2.408 ± 0.919

5.351 ± 0.424

6.756 ± 0.259

5.151 ± 0.594

5.217 ± 0.808

1.873 ± 0.366

4.95 ± 0.342

7.09 ± 1.69

11.037 ± 0.891

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.14 ± 0.483

4.415 ± 0.406

5.217 ± 1.132

4.615 ± 0.281

3.612 ± 0.569

5.619 ± 0.399

7.157 ± 0.528

5.953 ± 0.851

1.405 ± 0.239

3.612 ± 0.139
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski