Succinatimonas sp. CAG:777

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinatimonas; environmental samples

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1970 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R5ELA1|R5ELA1_9GAMM Protein TolA OS=Succinatimonas sp. CAG:777 OX=1262974 GN=BN779_00803 PE=4 SV=1
MM1 pKa = 7.19FVINNEE7 pKa = 3.69ICSQCGEE14 pKa = 4.35CQDD17 pKa = 3.86ICPCGAIEE25 pKa = 4.22QQPDD29 pKa = 3.26DD30 pKa = 4.12SFKK33 pKa = 10.56IDD35 pKa = 4.7AEE37 pKa = 4.31MCSDD41 pKa = 4.28CAACQSVCPFEE52 pKa = 6.65AIEE55 pKa = 4.16EE56 pKa = 4.33KK57 pKa = 10.71EE58 pKa = 3.9DD59 pKa = 3.96DD60 pKa = 3.89KK61 pKa = 12.07

Molecular weight: 6.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R5EUU8|R5EUU8_9GAMM Ankyrin OS=Succinatimonas sp. CAG:777 OX=1262974 GN=BN779_00644 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.52RR3 pKa = 11.84TFQPNVTKK11 pKa = 10.67RR12 pKa = 11.84KK13 pKa = 7.14RR14 pKa = 11.84THH16 pKa = 5.69GFRR19 pKa = 11.84VRR21 pKa = 11.84MRR23 pKa = 11.84TADD26 pKa = 3.23GRR28 pKa = 11.84KK29 pKa = 8.25VLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.95GRR39 pKa = 11.84KK40 pKa = 9.09RR41 pKa = 11.84LTTVNGG47 pKa = 3.51

Molecular weight: 5.61 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1970

0

1970

633173

29

1745

321.4

35.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.56 ± 0.063

1.43 ± 0.022

6.121 ± 0.041

6.175 ± 0.045

4.548 ± 0.046

6.256 ± 0.059

1.788 ± 0.022

7.044 ± 0.048

7.659 ± 0.049

9.745 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.4 ± 0.025

5.168 ± 0.046

3.404 ± 0.031

3.078 ± 0.033

3.936 ± 0.035

7.063 ± 0.056

5.323 ± 0.036

7.004 ± 0.049

0.708 ± 0.015

3.59 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski