Lynx canadensis associated microvirus CLP 9413

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CI87|A0A2Z5CI87_9VIRU Replication initiation protein OS=Lynx canadensis associated microvirus CLP 9413 OX=2219141 PE=4 SV=1
MM1 pKa = 7.39TFGVYY6 pKa = 10.57AIRR9 pKa = 11.84DD10 pKa = 3.7VKK12 pKa = 9.87TGFMSPHH19 pKa = 7.19VEE21 pKa = 3.91EE22 pKa = 5.02SDD24 pKa = 3.43PVAIRR29 pKa = 11.84NFEE32 pKa = 4.26HH33 pKa = 7.11AVQSSDD39 pKa = 4.2GILMSHH45 pKa = 6.93AADD48 pKa = 4.17FSFYY52 pKa = 10.88RR53 pKa = 11.84LGTFDD58 pKa = 3.96SATGLIAADD67 pKa = 3.81TMPTLIMEE75 pKa = 6.05AIDD78 pKa = 3.82CVPP81 pKa = 3.47

Molecular weight: 8.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CHX0|A0A2Z5CHX0_9VIRU Nonstructural protein OS=Lynx canadensis associated microvirus CLP 9413 OX=2219141 PE=4 SV=1
MM1 pKa = 7.5AVNSAANAAQSGVTWQNNPAMSHH24 pKa = 6.0AVSQASGMIDD34 pKa = 4.0KK35 pKa = 10.66ISGIADD41 pKa = 3.72RR42 pKa = 11.84NSAWSAAQAEE52 pKa = 4.47QLRR55 pKa = 11.84DD56 pKa = 3.13WQTQQNKK63 pKa = 9.36IAMDD67 pKa = 3.66YY68 pKa = 10.63NAAEE72 pKa = 4.09AAKK75 pKa = 10.52NRR77 pKa = 11.84DD78 pKa = 2.96WQEE81 pKa = 3.78YY82 pKa = 7.88MSNTAHH88 pKa = 5.58QRR90 pKa = 11.84EE91 pKa = 4.28VRR93 pKa = 11.84DD94 pKa = 3.79LKK96 pKa = 11.22AAGLNPILSAMGGNGAAVGSGATASGVTSAGAKK129 pKa = 9.73GDD131 pKa = 3.66RR132 pKa = 11.84DD133 pKa = 3.56TSANNAIVSVLGSLLNSMTSMAMSTNSAITNLAVADD169 pKa = 4.64KK170 pKa = 9.78YY171 pKa = 11.7NAMSKK176 pKa = 8.76YY177 pKa = 9.08TADD180 pKa = 3.77LSSNTQLAGYY190 pKa = 9.18RR191 pKa = 11.84ISAEE195 pKa = 4.14TALNTANINAAVSRR209 pKa = 11.84YY210 pKa = 9.99VSDD213 pKa = 4.06NNLKK217 pKa = 10.54GSQAMAAATKK227 pKa = 10.37ISAQLHH233 pKa = 6.0ADD235 pKa = 3.32ASKK238 pKa = 9.72YY239 pKa = 10.67AADD242 pKa = 3.88KK243 pKa = 11.21GYY245 pKa = 8.79LTSTDD250 pKa = 3.3VAKK253 pKa = 10.81INADD257 pKa = 2.93INKK260 pKa = 8.89QLKK263 pKa = 9.76QMGIDD268 pKa = 3.42AQFDD272 pKa = 3.6FARR275 pKa = 11.84DD276 pKa = 3.64YY277 pKa = 11.14PSNAFQAVGSISDD290 pKa = 3.74LFGNASGGSGKK301 pKa = 10.5GVSSLFNSVVNGLRR315 pKa = 11.84GGFGEE320 pKa = 4.41RR321 pKa = 11.84KK322 pKa = 9.66SGFSGGSKK330 pKa = 10.15GYY332 pKa = 9.6SGKK335 pKa = 10.44RR336 pKa = 3.21

Molecular weight: 34.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1246

81

558

311.5

34.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.433 ± 2.352

0.401 ± 0.341

6.982 ± 0.434

4.173 ± 1.049

3.772 ± 0.606

7.223 ± 0.887

1.605 ± 0.266

4.735 ± 0.474

5.217 ± 1.038

6.742 ± 0.756

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.809 ± 0.537

5.136 ± 1.307

5.056 ± 1.438

3.692 ± 0.51

4.815 ± 0.479

8.668 ± 1.338

6.18 ± 0.556

6.019 ± 1.122

1.525 ± 0.336

4.815 ± 0.933
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski