Staphylococcus lentus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Mammaliicoccus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2457 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A178PEJ9|A0A178PEJ9_STALE Gram_pos_anchor domain-containing protein OS=Staphylococcus lentus OX=42858 GN=AXY37_08430 PE=4 SV=1
MM1 pKa = 7.37VHH3 pKa = 6.59EE4 pKa = 5.25LGTVGMVCPFPLIEE18 pKa = 4.83AQNKK22 pKa = 8.3MDD24 pKa = 4.04EE25 pKa = 4.34LQAGEE30 pKa = 4.02QLKK33 pKa = 10.22IDD35 pKa = 4.4FDD37 pKa = 4.17CTQATEE43 pKa = 4.89ALPNWAADD51 pKa = 3.18NGYY54 pKa = 9.21PVTNYY59 pKa = 9.8EE60 pKa = 4.18QVGDD64 pKa = 4.22ASWTITVEE72 pKa = 4.16KK73 pKa = 10.49QQ74 pKa = 2.69

Molecular weight: 8.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A178NE84|A0A178NE84_STALE ABC transporter ATP-binding protein OS=Staphylococcus lentus OX=42858 GN=AXY37_11420 PE=4 SV=1
MM1 pKa = 7.49VKK3 pKa = 9.1RR4 pKa = 11.84TYY6 pKa = 10.35QPNKK10 pKa = 8.16RR11 pKa = 11.84KK12 pKa = 9.54HH13 pKa = 5.99SKK15 pKa = 8.91VHH17 pKa = 5.68GFRR20 pKa = 11.84ARR22 pKa = 11.84MSSKK26 pKa = 10.48NGRR29 pKa = 11.84KK30 pKa = 8.91VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.05GRR40 pKa = 11.84KK41 pKa = 8.7VLSAA45 pKa = 4.05

Molecular weight: 5.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2457

0

2457

745563

37

1497

303.4

34.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.924 ± 0.049

0.625 ± 0.012

5.695 ± 0.045

7.459 ± 0.057

4.566 ± 0.037

6.344 ± 0.046

2.133 ± 0.023

8.997 ± 0.051

7.679 ± 0.053

9.316 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.684 ± 0.022

5.5 ± 0.041

3.213 ± 0.023

3.571 ± 0.035

3.315 ± 0.033

6.098 ± 0.036

5.468 ± 0.027

6.717 ± 0.039

0.793 ± 0.017

3.902 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski