Candidatus Vampirococcus archaeovorus

Taxonomy: cellular organisms; Bacteria; PVC group; Candidatus Omnitrophica; Candidatus Vampirococcus

Average proteome isoelectric point is 7.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1851 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A410P3Y7|A0A410P3Y7_9BACT Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Candidatus Vampirococcus archaeovorus OX=1930593 GN=BU251_03805 PE=4 SV=1
MM1 pKa = 7.05VKK3 pKa = 10.38VYY5 pKa = 10.65LPEE8 pKa = 6.0LGEE11 pKa = 4.49GVAKK15 pKa = 9.81ATVSYY20 pKa = 9.64WYY22 pKa = 9.98VEE24 pKa = 4.23EE25 pKa = 4.74GATVTEE31 pKa = 4.42GSEE34 pKa = 4.05LVEE37 pKa = 4.16VSTDD41 pKa = 2.92KK42 pKa = 11.12ATFNVPAPCSGNVIEE57 pKa = 5.25IVAHH61 pKa = 6.03EE62 pKa = 4.43GDD64 pKa = 4.0VVEE67 pKa = 5.06IGAVLAVIEE76 pKa = 4.53EE77 pKa = 4.47DD78 pKa = 3.54TVSEE82 pKa = 4.32SEE84 pKa = 4.36EE85 pKa = 4.09EE86 pKa = 4.23AEE88 pKa = 4.62GAA90 pKa = 4.15

Molecular weight: 9.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A410P715|A0A410P715_9BACT UDP-glucose 6-dehydrogenase OS=Candidatus Vampirococcus archaeovorus OX=1930593 GN=BU251_02990 PE=3 SV=1
MM1 pKa = 7.82KK2 pKa = 10.42YY3 pKa = 10.12HH4 pKa = 7.37LKK6 pKa = 9.51TPTKK10 pKa = 8.89IVGKK14 pKa = 9.3RR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.59GFRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84MKK24 pKa = 8.18TKK26 pKa = 10.25KK27 pKa = 10.25GRR29 pKa = 11.84LVLKK33 pKa = 10.46ARR35 pKa = 11.84RR36 pKa = 11.84QKK38 pKa = 10.29GRR40 pKa = 11.84HH41 pKa = 5.38RR42 pKa = 11.84LTVV45 pKa = 3.07

Molecular weight: 5.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1851

0

1851

591068

33

39677

319.3

35.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.736 ± 0.136

1.264 ± 0.068

5.337 ± 0.039

6.263 ± 0.061

4.655 ± 0.052

7.394 ± 0.059

1.903 ± 0.028

6.654 ± 0.11

6.645 ± 0.152

9.893 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.453 ± 0.04

3.256 ± 0.051

3.972 ± 0.034

3.134 ± 0.085

6.192 ± 0.066

5.836 ± 0.088

4.753 ± 0.097

7.456 ± 0.054

1.033 ± 0.032

3.172 ± 0.043
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski