Beihai barnacle virus 3

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 5.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KJS1|A0A1L3KJS1_9VIRU Uncharacterized protein OS=Beihai barnacle virus 3 OX=1922361 PE=4 SV=1
MM1 pKa = 7.14FRR3 pKa = 11.84ASLLQVSPPLYY14 pKa = 8.88EE15 pKa = 4.0WPVADD20 pKa = 4.81AEE22 pKa = 4.59VRR24 pKa = 11.84DD25 pKa = 4.1STASIDD31 pKa = 3.58SGINQPVLGVKK42 pKa = 10.41AILGKK47 pKa = 10.41IKK49 pKa = 10.68DD50 pKa = 3.88LTEE53 pKa = 4.81LIEE56 pKa = 4.49GEE58 pKa = 4.26IVDD61 pKa = 4.32LAVVVDD67 pKa = 4.81SIEE70 pKa = 4.03ATTLEE75 pKa = 4.13IAASVDD81 pKa = 3.82VIAGEE86 pKa = 3.89ITEE89 pKa = 4.25IAIATTDD96 pKa = 3.65CAVALDD102 pKa = 4.68SIAVTVDD109 pKa = 2.74LHH111 pKa = 7.01NVVPWPCVGII121 pKa = 4.13

Molecular weight: 12.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KJJ2|A0A1L3KJJ2_9VIRU Uncharacterized protein OS=Beihai barnacle virus 3 OX=1922361 PE=4 SV=1
MM1 pKa = 7.52PRR3 pKa = 11.84FGRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84FAPRR12 pKa = 11.84RR13 pKa = 11.84GRR15 pKa = 11.84ARR17 pKa = 11.84GGPARR22 pKa = 11.84PQNVTVNIKK31 pKa = 10.56LSQTDD36 pKa = 3.46ANADD40 pKa = 3.45GSNPAVYY47 pKa = 10.39VSLSSQQIIDD57 pKa = 4.06HH58 pKa = 6.34GPVLNGIKK66 pKa = 9.89PAFARR71 pKa = 11.84IRR73 pKa = 11.84GMTLEE78 pKa = 4.35VTSGAAATTEE88 pKa = 4.49GIGAYY93 pKa = 7.3MAWRR97 pKa = 11.84GVMPDD102 pKa = 3.58TTTMDD107 pKa = 3.68LGATILEE114 pKa = 4.41AATRR118 pKa = 11.84RR119 pKa = 11.84SAPGISARR127 pKa = 11.84HH128 pKa = 4.61TWRR131 pKa = 11.84NFPTRR136 pKa = 11.84IRR138 pKa = 11.84LRR140 pKa = 11.84TQGAEE145 pKa = 3.82RR146 pKa = 11.84TDD148 pKa = 3.12IQGNVSHH155 pKa = 7.22HH156 pKa = 6.94DD157 pKa = 3.53VFGVGVTYY165 pKa = 10.03PKK167 pKa = 10.56GAPPPLAILKK177 pKa = 8.67ATFQYY182 pKa = 10.9GGADD186 pKa = 3.17MVSAEE191 pKa = 4.26VVEE194 pKa = 4.53GTGEE198 pKa = 3.58IEE200 pKa = 4.09YY201 pKa = 10.48DD202 pKa = 3.19HH203 pKa = 7.2EE204 pKa = 4.46YY205 pKa = 10.03PAEE208 pKa = 4.1KK209 pKa = 9.35LTRR212 pKa = 11.84DD213 pKa = 3.84FLDD216 pKa = 3.38QANEE220 pKa = 3.92KK221 pKa = 10.7LGIPLGYY228 pKa = 9.2TSDD231 pKa = 3.35SGAICFVRR239 pKa = 11.84MLVVYY244 pKa = 10.68LCDD247 pKa = 3.68SKK249 pKa = 11.36EE250 pKa = 3.97LYY252 pKa = 10.23AVNSGALTSFKK263 pKa = 10.67LPYY266 pKa = 9.99EE267 pKa = 4.24SFVFPARR274 pKa = 11.84SSSNEE279 pKa = 3.14GKK281 pKa = 10.5LYY283 pKa = 10.82SRR285 pKa = 11.84INAWCQTPITPPGAAPGEE303 pKa = 4.62VYY305 pKa = 9.68PAHH308 pKa = 7.22ADD310 pKa = 3.62DD311 pKa = 4.4VNLVGDD317 pKa = 4.5FEE319 pKa = 6.15HH320 pKa = 7.69DD321 pKa = 3.73FGIHH325 pKa = 6.32DD326 pKa = 3.83MYY328 pKa = 10.95VRR330 pKa = 11.84SVMITPMTRR339 pKa = 11.84TAGEE343 pKa = 4.52VLTMAASGAAAVATYY358 pKa = 9.2PVIPASSSS366 pKa = 3.02

Molecular weight: 39.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3376

121

2315

675.2

74.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.893 ± 0.733

1.718 ± 0.217

5.954 ± 0.599

6.783 ± 1.27

3.347 ± 0.251

7.109 ± 0.794

2.844 ± 0.274

4.976 ± 0.634

4.502 ± 0.954

7.05 ± 0.739

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.169 ± 0.534

3.732 ± 0.367

4.769 ± 0.536

3.614 ± 0.312

6.309 ± 0.618

6.309 ± 0.729

5.509 ± 0.581

7.82 ± 0.802

1.422 ± 0.177

3.169 ± 0.359
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski