Sena Madureira virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sripuvirus; Sena Madureira sripuvirus

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R1E6|A0A0D3R1E6_9RHAB Phosphoprotein OS=Sena Madureira virus OX=1272957 PE=4 SV=1
MM1 pKa = 7.68SYY3 pKa = 10.91YY4 pKa = 10.81LEE6 pKa = 4.19EE7 pKa = 4.46LKK9 pKa = 11.39SNDD12 pKa = 2.99VNMEE16 pKa = 4.04EE17 pKa = 4.8VPFDD21 pKa = 3.31TTAYY25 pKa = 8.92NTFEE29 pKa = 3.85VDD31 pKa = 4.99AIPEE35 pKa = 4.27GLPQWEE41 pKa = 4.46IKK43 pKa = 9.88RR44 pKa = 11.84RR45 pKa = 11.84QIDD48 pKa = 3.84NILGALSQLGVRR60 pKa = 11.84CDD62 pKa = 3.76YY63 pKa = 10.66LTDD66 pKa = 3.92DD67 pKa = 3.77VNSIRR72 pKa = 11.84FYY74 pKa = 10.33ITLDD78 pKa = 3.38PQLYY82 pKa = 9.72SYY84 pKa = 10.94EE85 pKa = 4.12VDD87 pKa = 3.58PEE89 pKa = 4.58DD90 pKa = 4.32NFIIFEE96 pKa = 4.21NEE98 pKa = 3.46QSEE101 pKa = 4.74DD102 pKa = 3.68EE103 pKa = 5.42DD104 pKa = 3.81EE105 pKa = 4.32FLCFIEE111 pKa = 4.8EE112 pKa = 3.96WDD114 pKa = 3.77FF115 pKa = 3.97

Molecular weight: 13.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1U0|A0A0D3R1U0_9RHAB Nucleocapsid protein OS=Sena Madureira virus OX=1272957 PE=4 SV=1
MM1 pKa = 7.27SWIFGNRR8 pKa = 11.84DD9 pKa = 2.82RR10 pKa = 11.84TQLFDD15 pKa = 3.5SYY17 pKa = 11.61LNGSSSDD24 pKa = 3.48NTSQQDD30 pKa = 3.53LPTYY34 pKa = 10.35QIVGDD39 pKa = 4.33FNLILNKK46 pKa = 10.12ALQSKK51 pKa = 10.05EE52 pKa = 4.09DD53 pKa = 3.6YY54 pKa = 10.74KK55 pKa = 11.27DD56 pKa = 3.19LHH58 pKa = 6.18KK59 pKa = 10.95QLVEE63 pKa = 4.23NYY65 pKa = 7.95TGSYY69 pKa = 7.85SAKK72 pKa = 9.73PIVILLVRR80 pKa = 11.84LTALTLRR87 pKa = 11.84KK88 pKa = 10.25DD89 pKa = 2.94KK90 pKa = 10.74TEE92 pKa = 4.23RR93 pKa = 11.84DD94 pKa = 2.99NHH96 pKa = 6.27YY97 pKa = 10.64YY98 pKa = 10.24SGSFAGIIRR107 pKa = 11.84LGISVDD113 pKa = 4.01LPTPPDD119 pKa = 3.15INRR122 pKa = 11.84YY123 pKa = 9.98SFDD126 pKa = 3.24HH127 pKa = 6.73SINNSEE133 pKa = 3.68YY134 pKa = 8.47RR135 pKa = 11.84GRR137 pKa = 11.84YY138 pKa = 7.76FGSVAYY144 pKa = 8.02TKK146 pKa = 10.57RR147 pKa = 11.84RR148 pKa = 11.84GEE150 pKa = 4.1SVRR153 pKa = 11.84NHH155 pKa = 4.38STYY158 pKa = 10.59IKK160 pKa = 10.65NLARR164 pKa = 11.84TNPLTFEE171 pKa = 5.08DD172 pKa = 5.52FDD174 pKa = 4.92LSDD177 pKa = 3.83YY178 pKa = 11.0KK179 pKa = 11.24FEE181 pKa = 4.39INKK184 pKa = 9.4RR185 pKa = 11.84HH186 pKa = 5.91ILISQKK192 pKa = 11.04

Molecular weight: 22.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3683

99

2098

526.1

60.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.824 ± 0.555

2.009 ± 0.338

6.109 ± 0.656

6.734 ± 0.714

4.643 ± 0.262

5.783 ± 0.487

1.982 ± 0.339

9.449 ± 0.724

7.44 ± 0.484

9.367 ± 0.505

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.525 ± 0.335

6.326 ± 0.53

3.72 ± 0.225

2.987 ± 0.369

4.507 ± 0.422

7.657 ± 0.559

5.349 ± 0.398

4.724 ± 0.43

1.792 ± 0.312

4.073 ± 0.437
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski