Xanthomonas phage vB_XveM_DIBBI

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Dibbivirus; Xanthomonas virus DIBBI

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 81 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I3PGT6|I3PGT6_9CAUD Terminase small subunit OS=Xanthomonas phage vB_XveM_DIBBI OX=1129194 GN=DIBBI_003 PE=4 SV=1
MM1 pKa = 8.31DD2 pKa = 6.12DD3 pKa = 4.1FDD5 pKa = 6.17LMHH8 pKa = 7.51LDD10 pKa = 3.38TEE12 pKa = 4.22EE13 pKa = 4.73AEE15 pKa = 4.2RR16 pKa = 11.84KK17 pKa = 8.87AAEE20 pKa = 4.06VADD23 pKa = 4.61RR24 pKa = 11.84KK25 pKa = 10.74PEE27 pKa = 3.96VEE29 pKa = 5.09DD30 pKa = 5.8DD31 pKa = 3.73EE32 pKa = 5.59GDD34 pKa = 4.27CEE36 pKa = 4.46GCKK39 pKa = 9.58II40 pKa = 4.48

Molecular weight: 4.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I3PGY9|I3PGY9_9CAUD Putative membrane protein OS=Xanthomonas phage vB_XveM_DIBBI OX=1129194 GN=DIBBI_056 PE=4 SV=1
MM1 pKa = 7.47SKK3 pKa = 11.07ASIAVSNQLAATAVPVITEE22 pKa = 4.57GGRR25 pKa = 11.84QTWRR29 pKa = 11.84KK30 pKa = 8.13KK31 pKa = 10.79LVMIPMLHH39 pKa = 6.72HH40 pKa = 5.99MAQYY44 pKa = 11.08AEE46 pKa = 4.68LMDD49 pKa = 3.8KK50 pKa = 9.83FHH52 pKa = 7.52RR53 pKa = 11.84LGSVPSHH60 pKa = 6.39YY61 pKa = 9.98YY62 pKa = 9.28RR63 pKa = 11.84HH64 pKa = 6.29RR65 pKa = 11.84LVITGEE71 pKa = 4.04RR72 pKa = 11.84LVEE75 pKa = 4.17GAGEE79 pKa = 4.22HH80 pKa = 6.8GDD82 pKa = 3.76PKK84 pKa = 11.17VMPVYY89 pKa = 10.31RR90 pKa = 11.84FEE92 pKa = 4.02HH93 pKa = 6.42RR94 pKa = 11.84KK95 pKa = 7.8MKK97 pKa = 10.48SRR99 pKa = 11.84AKK101 pKa = 10.28LDD103 pKa = 3.3RR104 pKa = 11.84CFPRR108 pKa = 11.84GKK110 pKa = 10.11AYY112 pKa = 10.38RR113 pKa = 11.84RR114 pKa = 11.84IMDD117 pKa = 4.52LARR120 pKa = 11.84IRR122 pKa = 11.84AAQVKK127 pKa = 10.17AGVVV131 pKa = 3.23

Molecular weight: 14.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

81

0

81

15012

24

852

185.3

20.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.512 ± 0.375

0.926 ± 0.116

6.295 ± 0.216

5.995 ± 0.337

3.69 ± 0.2

7.947 ± 0.353

1.972 ± 0.179

6.322 ± 0.211

5.755 ± 0.256

7.248 ± 0.207

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.858 ± 0.144

4.723 ± 0.193

3.491 ± 0.141

4.05 ± 0.162

5.642 ± 0.24

6.188 ± 0.243

5.842 ± 0.233

6.881 ± 0.221

1.359 ± 0.118

3.304 ± 0.148
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski