Cydia pomonella granulosis virus (isolate Mexico/1963) (CpGV) (Cydia pomonella granulovirus)

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Betabaculovirus; Cydia pomonella granulovirus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 143 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q91EY7|Q91EY7_GVCPM ORF68 P47 OS=Cydia pomonella granulosis virus (isolate Mexico/1963) OX=654905 GN=orf68 p47 PE=4 SV=1
MM1 pKa = 6.59TTLLVVIFVMVFVVATVALASGSSSGDD28 pKa = 3.33VYY30 pKa = 11.02EE31 pKa = 5.34GPNDD35 pKa = 4.15DD36 pKa = 5.88DD37 pKa = 6.01VDD39 pKa = 4.87DD40 pKa = 5.29EE41 pKa = 4.57YY42 pKa = 11.62QSEE45 pKa = 4.44DD46 pKa = 3.74EE47 pKa = 4.47PSEE50 pKa = 4.31SEE52 pKa = 4.03PSVSDD57 pKa = 3.63SVSEE61 pKa = 3.94YY62 pKa = 10.98SDD64 pKa = 3.28VSEE67 pKa = 5.1YY68 pKa = 11.34SDD70 pKa = 5.17DD71 pKa = 5.44DD72 pKa = 4.09YY73 pKa = 12.03LSDD76 pKa = 3.63HH77 pKa = 7.01HH78 pKa = 6.63STSDD82 pKa = 4.04DD83 pKa = 3.95SEE85 pKa = 5.8PDD87 pKa = 3.05TDD89 pKa = 4.35LVYY92 pKa = 11.12SLMYY96 pKa = 9.88RR97 pKa = 11.84YY98 pKa = 8.5PAAIQNEE105 pKa = 5.08GIAAIHH111 pKa = 6.36SYY113 pKa = 10.2IVQQCHH119 pKa = 4.6QFYY122 pKa = 9.71PSTPIFPNPFNCEE135 pKa = 3.74QVFMCMNNNASSNYY149 pKa = 8.05ATRR152 pKa = 11.84NCGTSLRR159 pKa = 11.84GIQWPGGACVLRR171 pKa = 11.84EE172 pKa = 3.85EE173 pKa = 4.68SHH175 pKa = 7.0CDD177 pKa = 4.25FYY179 pKa = 11.11PLPPTT184 pKa = 4.09

Molecular weight: 20.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q91EX2|Q91EX2_GVCPM ORF83 similar to AcMNPV ORF103 OS=Cydia pomonella granulosis virus (isolate Mexico/1963) OX=654905 GN=orf83 PE=4 SV=1
MM1 pKa = 6.67VRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84SRR8 pKa = 11.84SPNRR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84SYY16 pKa = 10.28RR17 pKa = 11.84SRR19 pKa = 11.84SRR21 pKa = 11.84SRR23 pKa = 11.84SRR25 pKa = 11.84SRR27 pKa = 11.84SRR29 pKa = 11.84SRR31 pKa = 11.84SRR33 pKa = 11.84SRR35 pKa = 11.84SPYY38 pKa = 7.94RR39 pKa = 11.84SHH41 pKa = 6.19YY42 pKa = 10.11HH43 pKa = 7.05HH44 pKa = 7.35INQYY48 pKa = 9.07II49 pKa = 3.24

Molecular weight: 6.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

143

0

143

36936

48

1131

258.3

29.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.676 ± 0.161

2.54 ± 0.135

6.135 ± 0.124

6.048 ± 0.219

4.44 ± 0.15

4.424 ± 0.174

2.667 ± 0.112

5.442 ± 0.133

6.213 ± 0.232

9.127 ± 0.172

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.683 ± 0.088

6.861 ± 0.163

3.539 ± 0.159

3.568 ± 0.138

5.371 ± 0.16

6.322 ± 0.177

6.154 ± 0.182

8.212 ± 0.202

0.994 ± 0.064

4.586 ± 0.147
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski