Ochrobactrum phage POI1126

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 78 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A240F4V3|A0A240F4V3_9CAUD Uncharacterized protein OS=Ochrobactrum phage POI1126 OX=1932118 GN=POI1126_55 PE=4 SV=1
MM1 pKa = 6.98STSEE5 pKa = 4.56HH6 pKa = 5.8KK7 pKa = 10.6RR8 pKa = 11.84VWLPEE13 pKa = 3.82EE14 pKa = 4.26FADD17 pKa = 4.91EE18 pKa = 3.89ISPRR22 pKa = 11.84SLEE25 pKa = 4.13SPDD28 pKa = 3.88DD29 pKa = 4.12FIRR32 pKa = 11.84RR33 pKa = 11.84TDD35 pKa = 3.08EE36 pKa = 4.19GNFVLSARR44 pKa = 11.84DD45 pKa = 3.28EE46 pKa = 4.58DD47 pKa = 5.03DD48 pKa = 4.33NFILEE53 pKa = 4.09GDD55 pKa = 3.91FTFSVPLAQGDD66 pKa = 4.17VVVFWPYY73 pKa = 10.43EE74 pKa = 3.88DD75 pKa = 4.32YY76 pKa = 11.37GAFSVWVDD84 pKa = 2.82ADD86 pKa = 3.47GKK88 pKa = 10.7YY89 pKa = 8.6RR90 pKa = 11.84TDD92 pKa = 3.06AFFPALANNFYY103 pKa = 11.22VQGDD107 pKa = 3.2WDD109 pKa = 3.87AYY111 pKa = 8.67GTFGEE116 pKa = 5.06LIEE119 pKa = 4.82SDD121 pKa = 3.93SFADD125 pKa = 4.49ALKK128 pKa = 10.5SDD130 pKa = 4.87PKK132 pKa = 9.85PTICIGQSFPGVSFRR147 pKa = 11.84FDD149 pKa = 3.09IDD151 pKa = 3.61SDD153 pKa = 3.93GNPRR157 pKa = 11.84FVRR160 pKa = 11.84QAWVNN165 pKa = 3.47

Molecular weight: 18.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A240F4T2|A0A240F4T2_9CAUD Uncharacterized protein OS=Ochrobactrum phage POI1126 OX=1932118 GN=POI1126_29 PE=4 SV=1
MM1 pKa = 7.81PLHH4 pKa = 6.78LKK6 pKa = 8.94RR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 8.36YY10 pKa = 10.95KK11 pKa = 10.38LFRR14 pKa = 11.84RR15 pKa = 11.84YY16 pKa = 9.52KK17 pKa = 10.42RR18 pKa = 11.84LFGLNGYY25 pKa = 7.8WCYY28 pKa = 9.91PAGSDD33 pKa = 3.7KK34 pKa = 10.93RR35 pKa = 11.84VIAVRR40 pKa = 11.84LDD42 pKa = 3.65RR43 pKa = 11.84LCDD46 pKa = 3.73KK47 pKa = 10.99AWARR51 pKa = 11.84CRR53 pKa = 11.84DD54 pKa = 3.49AAIEE58 pKa = 4.02RR59 pKa = 11.84AVGLGG64 pKa = 3.21

Molecular weight: 7.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

78

0

78

18435

37

4841

236.3

26.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.901 ± 0.375

0.705 ± 0.215

6.607 ± 0.291

6.547 ± 0.239

3.358 ± 0.141

7.274 ± 0.393

1.795 ± 0.177

5.435 ± 0.258

5.256 ± 0.259

7.551 ± 0.311

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.419 ± 0.087

3.83 ± 0.171

4.991 ± 0.202

4.188 ± 0.241

7.231 ± 0.248

5.495 ± 0.174

5.381 ± 0.197

5.788 ± 0.203

1.644 ± 0.188

2.604 ± 0.148
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski