Commensalibacter sp. MX01

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Commensalibacter; unclassified Commensalibacter

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2060 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W7DYL5|W7DYL5_9PROT AFG1 family ATPase OS=Commensalibacter sp. MX01 OX=1208583 GN=COMX_07290 PE=4 SV=1
MM1 pKa = 8.13DD2 pKa = 5.36NNDD5 pKa = 3.36ANEE8 pKa = 4.29NYY10 pKa = 10.08VFDD13 pKa = 5.64PDD15 pKa = 4.33SEE17 pKa = 4.86SVDD20 pKa = 3.18PDD22 pKa = 3.31QPFEE26 pKa = 4.19VGSDD30 pKa = 3.59FFDD33 pKa = 3.77NPITKK38 pKa = 9.54EE39 pKa = 3.76ASVKK43 pKa = 10.46FFGDD47 pKa = 2.97LRR49 pKa = 11.84DD50 pKa = 4.18YY51 pKa = 9.9ITSGNVKK58 pKa = 10.39DD59 pKa = 5.1VVLEE63 pKa = 4.2PNTHH67 pKa = 5.93IDD69 pKa = 4.03ANEE72 pKa = 3.92LDD74 pKa = 3.93YY75 pKa = 11.52TPIVTMYY82 pKa = 10.68SFSDD86 pKa = 3.63SQNIFYY92 pKa = 10.76LSTGKK97 pKa = 10.24FPQDD101 pKa = 2.75TEE103 pKa = 4.31YY104 pKa = 11.65AEE106 pKa = 4.34VTLGPGQTTDD116 pKa = 4.06NINGIPKK123 pKa = 9.76IQGDD127 pKa = 4.52GNNPNYY133 pKa = 10.27VRR135 pKa = 11.84IIGGVDD141 pKa = 3.52FNYY144 pKa = 10.3IADD147 pKa = 4.21GEE149 pKa = 4.43SGEE152 pKa = 5.05LISNNPLYY160 pKa = 10.54FYY162 pKa = 11.37GRR164 pKa = 11.84GLDD167 pKa = 3.67GNTSHH172 pKa = 6.6MGNWTIYY179 pKa = 9.98TDD181 pKa = 4.74DD182 pKa = 4.69FVDD185 pKa = 4.28PDD187 pKa = 3.5TGEE190 pKa = 4.37IYY192 pKa = 10.85DD193 pKa = 4.59DD194 pKa = 5.35DD195 pKa = 6.29RR196 pKa = 11.84DD197 pKa = 4.01TMIQTTDD204 pKa = 3.28GNNKK208 pKa = 7.94ITTGYY213 pKa = 10.49ARR215 pKa = 11.84STIDD219 pKa = 4.11LGSGNNIVYY228 pKa = 10.24SQGHH232 pKa = 5.08DD233 pKa = 3.52TITSSRR239 pKa = 11.84GGYY242 pKa = 7.18QTVTLTGSQSKK253 pKa = 8.33LTMGGNTTILDD264 pKa = 3.34IGNNNNISVGKK275 pKa = 9.9NSSVYY280 pKa = 10.26GAASDD285 pKa = 3.66IVQFDD290 pKa = 3.49TGDD293 pKa = 3.61MNEE296 pKa = 4.06YY297 pKa = 9.16TAGNNSTISATNGTDD312 pKa = 3.04LKK314 pKa = 10.97VIHH317 pKa = 6.59GLDD320 pKa = 2.92NTYY323 pKa = 10.93NINHH327 pKa = 6.76NLTFLNGSGNTVINIKK343 pKa = 9.05GTLAAFGAGSSQYY356 pKa = 10.08TLNAEE361 pKa = 4.71NIDD364 pKa = 3.98STSGSIFVANEE375 pKa = 3.63GNEE378 pKa = 4.23TLDD381 pKa = 4.04AASSSANLQIWANTVAGANNLLAKK405 pKa = 10.31AGQGDD410 pKa = 3.94DD411 pKa = 3.43TLAAGVGNATFTGGVGNNLFMFTKK435 pKa = 10.41EE436 pKa = 4.12SVQDD440 pKa = 3.46GTTIITDD447 pKa = 3.94FTNNDD452 pKa = 3.27KK453 pKa = 10.8IALYY457 pKa = 10.58NYY459 pKa = 10.17GLGSNGLTQILQQSQNDD476 pKa = 3.77ANGNAVLKK484 pKa = 8.64LTNNAAIVIEE494 pKa = 4.32GVSVSSLSTKK504 pKa = 10.36QFDD507 pKa = 3.56IADD510 pKa = 4.34FSHH513 pKa = 6.85

Molecular weight: 54.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W7DVK7|W7DVK7_9PROT Methionine aminopeptidase OS=Commensalibacter sp. MX01 OX=1208583 GN=map PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.09QPSKK9 pKa = 9.06IVRR12 pKa = 11.84KK13 pKa = 9.03HH14 pKa = 4.06RR15 pKa = 11.84HH16 pKa = 4.08GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.49VITNRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.87RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2060

0

2060

686148

41

4383

333.1

37.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.028 ± 0.065

1.114 ± 0.02

5.163 ± 0.041

5.422 ± 0.059

4.262 ± 0.044

6.91 ± 0.071

2.27 ± 0.027

7.752 ± 0.051

5.968 ± 0.045

9.948 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.455 ± 0.026

4.763 ± 0.076

4.38 ± 0.038

4.592 ± 0.049

4.366 ± 0.044

6.389 ± 0.046

5.428 ± 0.048

6.262 ± 0.04

1.292 ± 0.022

3.234 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski