Stenotrophomonas koreensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2597 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R0BSN2|A0A0R0BSN2_9GAMM DNA glycosylase OS=Stenotrophomonas koreensis OX=266128 GN=ABB25_02295 PE=4 SV=1
MM1 pKa = 7.58LSEE4 pKa = 5.95LITLLTCDD12 pKa = 4.47DD13 pKa = 4.33LQGEE17 pKa = 4.3ALADD21 pKa = 3.62CVSRR25 pKa = 11.84ITAAPMDD32 pKa = 4.84PEE34 pKa = 4.85LDD36 pKa = 3.66WIEE39 pKa = 4.49GDD41 pKa = 3.74SQAEE45 pKa = 4.03YY46 pKa = 9.53MQFAVLAEE54 pKa = 4.35LGDD57 pKa = 4.05YY58 pKa = 10.46FAMGQQPEE66 pKa = 4.16QLHH69 pKa = 5.78EE70 pKa = 4.8EE71 pKa = 3.9ISEE74 pKa = 4.1QFAAPLAPLPQADD87 pKa = 4.13MSLGAYY93 pKa = 7.28FQWLDD98 pKa = 3.26AEE100 pKa = 4.55LAARR104 pKa = 11.84PTPYY108 pKa = 10.52QLLEE112 pKa = 3.85WGNFFDD118 pKa = 5.78DD119 pKa = 3.48NLYY122 pKa = 9.29TFIVRR127 pKa = 11.84RR128 pKa = 11.84ADD130 pKa = 3.4TPRR133 pKa = 11.84ILSLAGQLGLQVEE146 pKa = 4.75PANTAGG152 pKa = 3.69

Molecular weight: 16.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R0BU21|A0A0R0BU21_9GAMM Histidine kinase OS=Stenotrophomonas koreensis OX=266128 GN=ABB25_00515 PE=4 SV=1
MM1 pKa = 7.22MLSIQQGLQEE11 pKa = 4.48EE12 pKa = 5.28GVVVPMTKK20 pKa = 9.32LCRR23 pKa = 11.84WFGVARR29 pKa = 11.84RR30 pKa = 11.84TVYY33 pKa = 10.37YY34 pKa = 10.31HH35 pKa = 5.14QTKK38 pKa = 9.55QPARR42 pKa = 11.84VRR44 pKa = 11.84PEE46 pKa = 3.25LAEE49 pKa = 4.68PIKK52 pKa = 10.59QLIEE56 pKa = 3.85QEE58 pKa = 4.06PSFGYY63 pKa = 8.74RR64 pKa = 11.84TVAALLGMNKK74 pKa = 8.28NTVQRR79 pKa = 11.84IFQLKK84 pKa = 7.71GWQVRR89 pKa = 11.84KK90 pKa = 9.9RR91 pKa = 11.84PIGRR95 pKa = 11.84RR96 pKa = 11.84PRR98 pKa = 11.84IQALPSVAAAPNQRR112 pKa = 11.84WATDD116 pKa = 3.44LCRR119 pKa = 11.84VWGGKK124 pKa = 9.77DD125 pKa = 2.94GWLSLALVIDD135 pKa = 3.83CHH137 pKa = 6.05TRR139 pKa = 11.84QLLGWHH145 pKa = 7.13LSRR148 pKa = 11.84TGKK151 pKa = 10.66ASTASAALEE160 pKa = 3.78QALITRR166 pKa = 11.84FGTLGRR172 pKa = 11.84VSEE175 pKa = 4.24PFLLRR180 pKa = 11.84SDD182 pKa = 3.61NGLVFTSRR190 pKa = 11.84DD191 pKa = 3.27YY192 pKa = 10.56TRR194 pKa = 11.84LVRR197 pKa = 11.84SYY199 pKa = 11.26GLQQEE204 pKa = 5.57FITPHH209 pKa = 6.55CPQQNGMVEE218 pKa = 3.99RR219 pKa = 11.84VIRR222 pKa = 11.84TLKK225 pKa = 7.71EE226 pKa = 3.85QCVHH230 pKa = 5.07RR231 pKa = 11.84HH232 pKa = 4.52RR233 pKa = 11.84FEE235 pKa = 4.4SQVHH239 pKa = 5.97ALRR242 pKa = 11.84VIGDD246 pKa = 4.08WIAFYY251 pKa = 10.9NRR253 pKa = 11.84QRR255 pKa = 11.84PHH257 pKa = 5.78QALKK261 pKa = 10.74MMTPDD266 pKa = 3.07AAYY269 pKa = 10.12AATLTAA275 pKa = 5.1

Molecular weight: 31.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2597

0

2597

842727

33

1764

324.5

35.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.444 ± 0.057

0.882 ± 0.015

5.444 ± 0.034

4.976 ± 0.046

3.16 ± 0.027

8.557 ± 0.049

2.28 ± 0.028

4.203 ± 0.029

2.467 ± 0.043

11.475 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.149 ± 0.021

2.609 ± 0.029

5.262 ± 0.037

4.921 ± 0.037

7.203 ± 0.04

5.204 ± 0.034

4.568 ± 0.036

7.357 ± 0.039

1.602 ± 0.026

2.237 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski