Amaricoccus sp. HB172011

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Amaricoccus

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4522 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A501WPD3|A0A501WPD3_9RHOB Alpha/beta hydrolase OS=Amaricoccus sp. HB172011 OX=2589815 GN=FJM51_12510 PE=4 SV=1
MM1 pKa = 7.6IYY3 pKa = 8.85KK4 pKa = 8.34TARR7 pKa = 11.84GASLSTSGAPTSWIGAEE24 pKa = 3.4IGAYY28 pKa = 10.46LSGTSGNDD36 pKa = 2.94EE37 pKa = 4.79LYY39 pKa = 11.13GNDD42 pKa = 3.42SATLAGGLGDD52 pKa = 3.99DD53 pKa = 4.76TYY55 pKa = 10.88MVWVPSTHH63 pKa = 5.72VLEE66 pKa = 4.6AANAGIDD73 pKa = 4.37TLDD76 pKa = 3.08SWIWGTTVLPEE87 pKa = 3.9NFEE90 pKa = 4.44NLFLNGPGSTGGTGNASANIIAAGEE115 pKa = 4.11VGATLDD121 pKa = 3.85GLGGDD126 pKa = 4.37DD127 pKa = 4.14VLIGGAAADD136 pKa = 3.55IFRR139 pKa = 11.84IEE141 pKa = 4.52AGNGSDD147 pKa = 4.53AIVGFTPGSDD157 pKa = 3.37VIEE160 pKa = 4.98LIDD163 pKa = 3.55YY164 pKa = 8.39GFSNFAQVKK173 pKa = 10.17AIATKK178 pKa = 9.52TGKK181 pKa = 10.15DD182 pKa = 3.48LTLHH186 pKa = 6.92LAQDD190 pKa = 4.45EE191 pKa = 4.46ILVLRR196 pKa = 11.84DD197 pKa = 3.4TKK199 pKa = 10.74LAQLDD204 pKa = 4.55GYY206 pKa = 11.07DD207 pKa = 4.11FGFPPPAPAPGAGQGSLSGPGAVYY231 pKa = 9.88TDD233 pKa = 3.52HH234 pKa = 6.59GWYY237 pKa = 10.09VLNNAWNAGGLTYY250 pKa = 9.56GTDD253 pKa = 3.32YY254 pKa = 11.16RR255 pKa = 11.84LDD257 pKa = 4.51AIYY260 pKa = 10.82DD261 pKa = 4.0PDD263 pKa = 4.67DD264 pKa = 3.71LTTGVTFSWSFPRR277 pKa = 11.84TTQAYY282 pKa = 8.37PPILAYY288 pKa = 9.96PEE290 pKa = 5.0VIFGPAPMSGGHH302 pKa = 6.16KK303 pKa = 9.62VTDD306 pKa = 3.5TADD309 pKa = 3.87FFPLQVGEE317 pKa = 4.26IQDD320 pKa = 3.43LTAAYY325 pKa = 9.68DD326 pKa = 3.34VRR328 pKa = 11.84YY329 pKa = 10.48DD330 pKa = 4.97GNTDD334 pKa = 2.98WFNVAFDD341 pKa = 3.13IWLTDD346 pKa = 3.44VPNGGPSSVTNEE358 pKa = 3.53VMVWVHH364 pKa = 5.94QGAVKK369 pKa = 10.49PFGDD373 pKa = 3.86QVGTYY378 pKa = 10.43SDD380 pKa = 3.4GTIAAKK386 pKa = 10.01IHH388 pKa = 6.59SDD390 pKa = 4.24DD391 pKa = 4.29SSDD394 pKa = 2.96WTYY397 pKa = 10.23TAVVLDD403 pKa = 3.75SDD405 pKa = 4.56HH406 pKa = 6.93PVGTISITGILSEE419 pKa = 4.77LEE421 pKa = 3.93SLGIVSPDD429 pKa = 3.23EE430 pKa = 4.3YY431 pKa = 10.47IGSVEE436 pKa = 4.14LGSEE440 pKa = 4.05IVAGAGRR447 pKa = 11.84LTINEE452 pKa = 4.18LTLTARR458 pKa = 11.84LDD460 pKa = 3.6DD461 pKa = 3.89RR462 pKa = 11.84TLEE465 pKa = 4.08SSGAEE470 pKa = 4.0TTVTLLDD477 pKa = 3.82GAGTQTHH484 pKa = 6.48AADD487 pKa = 3.94TGWFF491 pKa = 3.58

Molecular weight: 51.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A501WXA2|A0A501WXA2_9RHOB Uncharacterized protein OS=Amaricoccus sp. HB172011 OX=2589815 GN=FJM51_11985 PE=4 SV=1
MM1 pKa = 7.77ALTSSCVSRR10 pKa = 11.84ARR12 pKa = 11.84RR13 pKa = 11.84PARR16 pKa = 11.84PRR18 pKa = 11.84SSPAGRR24 pKa = 11.84RR25 pKa = 11.84GRR27 pKa = 11.84RR28 pKa = 11.84GARR31 pKa = 11.84PSGAARR37 pKa = 11.84SPSARR42 pKa = 11.84CRR44 pKa = 11.84ARR46 pKa = 11.84PGRR49 pKa = 11.84APSPRR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 11.84PPPGAGPAPRR66 pKa = 11.84RR67 pKa = 11.84GPARR71 pKa = 11.84RR72 pKa = 11.84RR73 pKa = 11.84RR74 pKa = 11.84RR75 pKa = 11.84NN76 pKa = 3.01

Molecular weight: 8.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4522

0

4522

1433990

28

2028

317.1

34.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.117 ± 0.062

0.831 ± 0.012

5.59 ± 0.028

6.108 ± 0.037

3.549 ± 0.025

9.38 ± 0.044

1.912 ± 0.017

4.722 ± 0.025

2.361 ± 0.029

10.334 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.395 ± 0.017

2.13 ± 0.017

5.725 ± 0.027

2.347 ± 0.021

8.18 ± 0.039

4.625 ± 0.028

4.996 ± 0.025

7.175 ± 0.03

1.428 ± 0.014

2.095 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski