Dechloromonas sp. HYN0024

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Azonexaceae; Dechloromonas; unclassified Dechloromonas

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3011 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3B7A1C3|A0A3B7A1C3_9RHOO Adenine DNA glycosylase OS=Dechloromonas sp. HYN0024 OX=2231055 GN=mutY PE=3 SV=1
MM1 pKa = 7.11QSWSGNDD8 pKa = 3.14IIYY11 pKa = 10.62GNSGDD16 pKa = 4.61DD17 pKa = 3.63VLKK20 pKa = 11.12GGAGDD25 pKa = 4.53DD26 pKa = 4.37YY27 pKa = 11.39IDD29 pKa = 4.35GGLGIDD35 pKa = 3.51QSVYY39 pKa = 10.22SANSSSVSLVRR50 pKa = 11.84HH51 pKa = 5.91LKK53 pKa = 10.54AGGVLLEE60 pKa = 4.28SAEE63 pKa = 4.35GSDD66 pKa = 3.1TLVNVEE72 pKa = 3.88QVQFNDD78 pKa = 3.48GTFNLEE84 pKa = 3.73SFIRR88 pKa = 11.84SIPTPSYY95 pKa = 8.33TTDD98 pKa = 3.42AGNATPTVYY107 pKa = 10.49SGAVGFLEE115 pKa = 4.36FQFLGGAVGEE125 pKa = 4.12IVIGSKK131 pKa = 11.17YY132 pKa = 10.61NDD134 pKa = 4.68FINLLAGDD142 pKa = 4.58DD143 pKa = 4.04AADD146 pKa = 3.89GAGGDD151 pKa = 4.15DD152 pKa = 4.13VLDD155 pKa = 4.17GGIGSNFLTGGAGKK169 pKa = 8.6DD170 pKa = 3.28TFFLDD175 pKa = 3.59GRR177 pKa = 11.84GGSVTWSTITDD188 pKa = 4.2FEE190 pKa = 6.53AGDD193 pKa = 3.77QVNIWGWQPNVSKK206 pKa = 11.06LLLTQASAGASGFSGATYY224 pKa = 9.88HH225 pKa = 7.2YY226 pKa = 10.48DD227 pKa = 3.49LNNDD231 pKa = 3.19GSIDD235 pKa = 3.65TSITFAVLALSAVPSPVPSDD255 pKa = 3.59VAGNGYY261 pKa = 9.99LLFGG265 pKa = 4.48

Molecular weight: 27.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3B7A917|A0A3B7A917_9RHOO P-II family nitrogen regulator OS=Dechloromonas sp. HYN0024 OX=2231055 GN=HYN24_01465 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.6RR14 pKa = 11.84THH16 pKa = 5.72GFLVRR21 pKa = 11.84MRR23 pKa = 11.84TKK25 pKa = 10.53GGRR28 pKa = 11.84AVIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.38GRR39 pKa = 11.84TRR41 pKa = 11.84LAVV44 pKa = 3.19

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3011

0

3011

978272

37

3669

324.9

35.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.514 ± 0.056

1.052 ± 0.019

5.445 ± 0.033

5.791 ± 0.042

3.738 ± 0.027

8.064 ± 0.049

2.208 ± 0.022

5.428 ± 0.036

4.11 ± 0.042

10.681 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.562 ± 0.024

3.118 ± 0.031

4.808 ± 0.035

3.723 ± 0.03

6.223 ± 0.048

5.541 ± 0.04

5.146 ± 0.062

7.211 ± 0.049

1.31 ± 0.02

2.327 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski