Bos taurus papillomavirus 16

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyokappapapillomavirus; Dyokappapapillomavirus 3

Average proteome isoelectric point is 5.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B2K201|A0A1B2K201_9PAPI Minor capsid protein L2 OS=Bos taurus papillomavirus 16 OX=1887214 GN=L2 PE=3 SV=1
MM1 pKa = 7.45HH2 pKa = 7.23GHH4 pKa = 6.49TPTLIDD10 pKa = 3.38IVLEE14 pKa = 3.98EE15 pKa = 4.95LPDD18 pKa = 4.29PVDD21 pKa = 3.95LQCQEE26 pKa = 3.79QLEE29 pKa = 4.36NEE31 pKa = 4.26EE32 pKa = 4.4EE33 pKa = 4.07EE34 pKa = 5.13GLLLDD39 pKa = 5.01DD40 pKa = 4.12YY41 pKa = 11.67VVYY44 pKa = 10.5ACCGHH49 pKa = 6.31CEE51 pKa = 3.89RR52 pKa = 11.84HH53 pKa = 5.28LKK55 pKa = 10.24VYY57 pKa = 10.39IRR59 pKa = 11.84GTVEE63 pKa = 3.75SVRR66 pKa = 11.84RR67 pKa = 11.84LQEE70 pKa = 3.95LLLSSLEE77 pKa = 4.36FVCPACGRR85 pKa = 11.84PRR87 pKa = 11.84RR88 pKa = 3.9

Molecular weight: 10.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B2K253|A0A1B2K253_9PAPI Replication protein E1 OS=Bos taurus papillomavirus 16 OX=1887214 GN=E1 PE=3 SV=1
MM1 pKa = 6.91EE2 pKa = 4.72TLLARR7 pKa = 11.84LDD9 pKa = 3.83ALQEE13 pKa = 4.01QLLTLYY19 pKa = 10.56EE20 pKa = 4.43SDD22 pKa = 4.76SKK24 pKa = 11.61DD25 pKa = 2.85IDD27 pKa = 3.81DD28 pKa = 5.37QIKK31 pKa = 9.28HH32 pKa = 5.43WSLLRR37 pKa = 11.84QEE39 pKa = 5.1YY40 pKa = 10.16VLQHH44 pKa = 6.32FARR47 pKa = 11.84KK48 pKa = 9.53HH49 pKa = 5.3SISRR53 pKa = 11.84LGMQTVLPLQVSQHH67 pKa = 5.4KK68 pKa = 10.13AKK70 pKa = 10.42EE71 pKa = 4.16AIEE74 pKa = 3.81MVMYY78 pKa = 10.92LEE80 pKa = 4.29SLKK83 pKa = 11.07NSTFAVEE90 pKa = 4.35PWTLTDD96 pKa = 3.31TSRR99 pKa = 11.84EE100 pKa = 3.95MFIIPPKK107 pKa = 10.1NCFKK111 pKa = 11.04KK112 pKa = 10.75GGTTVDD118 pKa = 2.54VWYY121 pKa = 10.01DD122 pKa = 3.39CLQANSMHH130 pKa = 5.31YY131 pKa = 8.35TAWSYY136 pKa = 11.17IYY138 pKa = 10.91YY139 pKa = 8.26EE140 pKa = 4.64TEE142 pKa = 3.98SGWIKK147 pKa = 11.19AEE149 pKa = 3.92GQVDD153 pKa = 4.05YY154 pKa = 11.2NGCYY158 pKa = 10.07YY159 pKa = 10.78EE160 pKa = 5.33DD161 pKa = 4.28GNTRR165 pKa = 11.84IYY167 pKa = 8.98YY168 pKa = 9.28TRR170 pKa = 11.84FEE172 pKa = 5.33DD173 pKa = 4.41DD174 pKa = 3.11AQRR177 pKa = 11.84YY178 pKa = 7.04SKK180 pKa = 10.97NMEE183 pKa = 3.87WEE185 pKa = 4.17VHH187 pKa = 5.35YY188 pKa = 8.82KK189 pKa = 8.16THH191 pKa = 5.75VFSPVASVSSTSDD204 pKa = 3.01SWCGGEE210 pKa = 4.22PDD212 pKa = 3.79STGGPLSEE220 pKa = 4.19QHH222 pKa = 6.79SLPLDD227 pKa = 3.75NKK229 pKa = 8.39TSTWRR234 pKa = 11.84AAADD238 pKa = 3.49RR239 pKa = 11.84DD240 pKa = 4.2TNNNRR245 pKa = 11.84DD246 pKa = 3.27IRR248 pKa = 11.84NWSQDD253 pKa = 3.4TVDD256 pKa = 3.54GATVDD261 pKa = 2.92RR262 pKa = 11.84HH263 pKa = 4.57TVQRR267 pKa = 11.84ACGDD271 pKa = 3.5HH272 pKa = 5.75NRR274 pKa = 11.84RR275 pKa = 11.84GARR278 pKa = 11.84RR279 pKa = 11.84GRR281 pKa = 11.84GGLQGRR287 pKa = 11.84KK288 pKa = 6.29RR289 pKa = 11.84HH290 pKa = 5.95RR291 pKa = 11.84SRR293 pKa = 11.84EE294 pKa = 4.05EE295 pKa = 3.92GGSGQEE301 pKa = 4.59NRR303 pKa = 11.84QQSQTSKK310 pKa = 10.32RR311 pKa = 11.84PCEE314 pKa = 3.36RR315 pKa = 11.84RR316 pKa = 11.84LRR318 pKa = 11.84HH319 pKa = 5.19RR320 pKa = 11.84QRR322 pKa = 11.84PSGEE326 pKa = 4.09GQPQPRR332 pKa = 11.84PRR334 pKa = 11.84EE335 pKa = 4.07APAAAQQGGDD345 pKa = 3.31TSEE348 pKa = 4.18EE349 pKa = 4.16EE350 pKa = 3.7EE351 pKa = 5.81DD352 pKa = 4.56IRR354 pKa = 11.84QLPQRR359 pKa = 11.84GTPPHH364 pKa = 6.19SPEE367 pKa = 4.06RR368 pKa = 11.84PVDD371 pKa = 3.61ARR373 pKa = 11.84GHH375 pKa = 5.84GEE377 pKa = 3.96GAGEE381 pKa = 3.73PRR383 pKa = 11.84RR384 pKa = 11.84PRR386 pKa = 11.84RR387 pKa = 11.84AVRR390 pKa = 11.84PIEE393 pKa = 4.39HH394 pKa = 6.61NCDD397 pKa = 3.27TPVLLFRR404 pKa = 11.84GGANQLKK411 pKa = 8.84CARR414 pKa = 11.84YY415 pKa = 8.42RR416 pKa = 11.84WLRR419 pKa = 11.84QYY421 pKa = 11.65AHH423 pKa = 7.41LFLAISKK430 pKa = 7.5TWGWVGAVGLGASSRR445 pKa = 11.84LLLAFEE451 pKa = 4.74STTQRR456 pKa = 11.84NQFLDD461 pKa = 4.28TVPMPPGVTLGWGRR475 pKa = 11.84LSSLL479 pKa = 3.86

Molecular weight: 54.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2619

88

611

374.1

42.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.498 ± 0.54

2.482 ± 0.68

6.529 ± 0.464

6.758 ± 0.562

3.475 ± 0.523

6.682 ± 0.687

2.711 ± 0.307

4.582 ± 0.542

4.811 ± 0.834

7.827 ± 0.704

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.215 ± 0.411

4.124 ± 0.519

6.606 ± 1.089

4.506 ± 0.448

6.224 ± 0.856

7.102 ± 0.912

6.796 ± 0.41

5.613 ± 0.515

1.833 ± 0.339

3.627 ± 0.517
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski