Gammapapillomavirus 14

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALR3|A0A2D2ALR3_9PAPI E4 OS=Gammapapillomavirus 14 OX=1513259 GN=E4 PE=4 SV=1
MM1 pKa = 7.15SLKK4 pKa = 10.03RR5 pKa = 11.84KK6 pKa = 9.37KK7 pKa = 10.01RR8 pKa = 11.84ASPQDD13 pKa = 3.25LYY15 pKa = 11.2RR16 pKa = 11.84RR17 pKa = 11.84CAQGGDD23 pKa = 4.63CIPDD27 pKa = 3.39VQNKK31 pKa = 9.52YY32 pKa = 10.79EE33 pKa = 4.08NTTIADD39 pKa = 3.7WLLKK43 pKa = 10.38IFGSVIYY50 pKa = 10.31LGNLGIGTGRR60 pKa = 11.84GTGGSFGYY68 pKa = 10.34RR69 pKa = 11.84PFGSAGTGRR78 pKa = 11.84PAQEE82 pKa = 4.14LPIARR87 pKa = 11.84PNVVIDD93 pKa = 4.91PITPSSLIPVEE104 pKa = 4.41PGAPSIVPLVEE115 pKa = 3.8GTPDD119 pKa = 2.91IGFAGPDD126 pKa = 3.4AGPTVAGEE134 pKa = 4.4DD135 pKa = 3.35IEE137 pKa = 6.19LYY139 pKa = 10.41TLTTPTTDD147 pKa = 2.91VAGVGGGPSVITTEE161 pKa = 4.11EE162 pKa = 4.57LEE164 pKa = 4.16TAIIDD169 pKa = 3.69AHH171 pKa = 6.53PAPATPKK178 pKa = 9.75QVIYY182 pKa = 10.98DD183 pKa = 3.69SVAQVAIEE191 pKa = 3.86THH193 pKa = 6.12VNPFYY198 pKa = 11.45NPDD201 pKa = 3.56ANNLNIYY208 pKa = 9.84VDD210 pKa = 3.84PLITGDD216 pKa = 3.9TVGGSYY222 pKa = 10.75FEE224 pKa = 5.91DD225 pKa = 3.6IPLEE229 pKa = 4.12RR230 pKa = 11.84LDD232 pKa = 3.76LQSFEE237 pKa = 4.69VEE239 pKa = 4.27EE240 pKa = 5.01PPTEE244 pKa = 4.12STPTSIGGRR253 pKa = 11.84LTNRR257 pKa = 11.84ARR259 pKa = 11.84DD260 pKa = 3.54LYY262 pKa = 11.31SRR264 pKa = 11.84FIQQVPVNEE273 pKa = 4.45PDD275 pKa = 4.43FLVQPSRR282 pKa = 11.84LVQFEE287 pKa = 4.24IEE289 pKa = 4.63NPAFDD294 pKa = 5.29PDD296 pKa = 3.3VSLIFEE302 pKa = 4.89RR303 pKa = 11.84DD304 pKa = 3.43LEE306 pKa = 4.33GLRR309 pKa = 11.84AAPNEE314 pKa = 3.91EE315 pKa = 3.78FADD318 pKa = 3.76IVRR321 pKa = 11.84LSQPRR326 pKa = 11.84VTMTQEE332 pKa = 3.5GNVRR336 pKa = 11.84VSRR339 pKa = 11.84IGTKK343 pKa = 10.24AAITTRR349 pKa = 11.84SGLTVGPQVHH359 pKa = 5.99YY360 pKa = 10.75FMDD363 pKa = 4.37LSVIEE368 pKa = 4.75AVPEE372 pKa = 4.29TIEE375 pKa = 4.38LQTLNLPNDD384 pKa = 3.69SNTIVDD390 pKa = 4.86DD391 pKa = 4.44LLAHH395 pKa = 5.71TTFIDD400 pKa = 3.53PTNAATLHH408 pKa = 5.82YY409 pKa = 9.49EE410 pKa = 3.77EE411 pKa = 5.71SDD413 pKa = 3.33IYY415 pKa = 11.31DD416 pKa = 4.24ALPEE420 pKa = 4.49SFDD423 pKa = 3.38NTQLVLSTNEE433 pKa = 3.92EE434 pKa = 4.36GEE436 pKa = 4.53SLVFPAFTEE445 pKa = 4.36SGLKK449 pKa = 9.77TIFVPGFGSILKK461 pKa = 8.48TSPTIPPSSVIFSNDD476 pKa = 2.3TDD478 pKa = 3.7TFLLHH483 pKa = 6.34VADD486 pKa = 4.98INLDD490 pKa = 3.8YY491 pKa = 10.99DD492 pKa = 3.94LHH494 pKa = 6.43PALLPRR500 pKa = 11.84KK501 pKa = 9.31RR502 pKa = 11.84RR503 pKa = 11.84RR504 pKa = 11.84LDD506 pKa = 3.09AFF508 pKa = 3.85

Molecular weight: 55.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALT9|A0A2D2ALT9_9PAPI Protein E7 OS=Gammapapillomavirus 14 OX=1513259 GN=E7 PE=3 SV=1
MM1 pKa = 6.82QAEE4 pKa = 4.42TRR6 pKa = 11.84EE7 pKa = 4.26SLSARR12 pKa = 11.84FVAQQDD18 pKa = 3.44IQLSLIEE25 pKa = 4.76KK26 pKa = 9.56DD27 pKa = 3.53SKK29 pKa = 11.28NIEE32 pKa = 3.72DD33 pKa = 5.14HH34 pKa = 5.21IAYY37 pKa = 9.04WEE39 pKa = 4.62AIRR42 pKa = 11.84KK43 pKa = 8.73EE44 pKa = 4.13NVISYY49 pKa = 6.91YY50 pKa = 10.66ARR52 pKa = 11.84KK53 pKa = 8.91EE54 pKa = 3.72HH55 pKa = 6.29MGRR58 pKa = 11.84LGLQPLPTTAVSEE71 pKa = 4.35HH72 pKa = 6.4RR73 pKa = 11.84AKK75 pKa = 10.62EE76 pKa = 4.06AIKK79 pKa = 8.67MQIYY83 pKa = 10.01LRR85 pKa = 11.84SLARR89 pKa = 11.84SEE91 pKa = 4.2YY92 pKa = 10.36GRR94 pKa = 11.84EE95 pKa = 3.55PWTLTEE101 pKa = 4.84CSAEE105 pKa = 4.22MFNAPPRR112 pKa = 11.84DD113 pKa = 3.86CFKK116 pKa = 10.69KK117 pKa = 10.12KK118 pKa = 10.28PIMVTVWFDD127 pKa = 3.37NDD129 pKa = 3.41EE130 pKa = 4.56KK131 pKa = 11.63NSFPYY136 pKa = 8.96TAYY139 pKa = 10.29EE140 pKa = 3.86YY141 pKa = 10.15IYY143 pKa = 10.92YY144 pKa = 10.29KK145 pKa = 10.58DD146 pKa = 5.67DD147 pKa = 3.54NDD149 pKa = 2.78VWYY152 pKa = 10.03KK153 pKa = 10.02VQGLVDD159 pKa = 3.53HH160 pKa = 7.51DD161 pKa = 3.55GLYY164 pKa = 10.62FKK166 pKa = 10.49EE167 pKa = 4.28HH168 pKa = 6.38TGDD171 pKa = 3.12TVYY174 pKa = 11.18YY175 pKa = 10.5QLFQPDD181 pKa = 3.45ALKK184 pKa = 11.1YY185 pKa = 8.42GTTGQWTVKK194 pKa = 10.25FKK196 pKa = 11.09NQTVLASVTSSTRR209 pKa = 11.84SFSKK213 pKa = 10.06RR214 pKa = 11.84SEE216 pKa = 4.26VVSGGTTSHH225 pKa = 6.94ASTSKK230 pKa = 8.15EE231 pKa = 4.2TPRR234 pKa = 11.84GGPVEE239 pKa = 4.07TSEE242 pKa = 5.27DD243 pKa = 3.73PSSPSSTTPRR253 pKa = 11.84LRR255 pKa = 11.84SGRR258 pKa = 11.84RR259 pKa = 11.84RR260 pKa = 11.84RR261 pKa = 11.84QQGEE265 pKa = 3.98YY266 pKa = 10.18SSEE269 pKa = 3.92SRR271 pKa = 11.84AKK273 pKa = 10.06RR274 pKa = 11.84PRR276 pKa = 11.84VGSDD280 pKa = 2.95TAPTPDD286 pKa = 3.05EE287 pKa = 4.07VGRR290 pKa = 11.84RR291 pKa = 11.84SQSVAAHH298 pKa = 6.06GLPRR302 pKa = 11.84LRR304 pKa = 11.84RR305 pKa = 11.84LQEE308 pKa = 3.73EE309 pKa = 4.16ARR311 pKa = 11.84DD312 pKa = 3.78PPIILITGRR321 pKa = 11.84QNTLKK326 pKa = 10.39CWRR329 pKa = 11.84NRR331 pKa = 11.84CKK333 pKa = 10.65EE334 pKa = 3.82NEE336 pKa = 4.27KK337 pKa = 10.25ISKK340 pKa = 10.3LFMCCSSVWKK350 pKa = 9.72WLGTEE355 pKa = 4.31DD356 pKa = 4.47NGLSEE361 pKa = 4.51GKK363 pKa = 8.97MLIAFRR369 pKa = 11.84TIDD372 pKa = 3.44QRR374 pKa = 11.84TAFINSVTLPKK385 pKa = 10.46HH386 pKa = 5.41CTLSLGKK393 pKa = 10.06LDD395 pKa = 4.05SLL397 pKa = 4.89

Molecular weight: 45.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2378

94

601

339.7

38.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.056 ± 0.397

2.229 ± 0.73

6.56 ± 0.327

6.686 ± 0.676

4.71 ± 0.661

5.299 ± 0.674

1.766 ± 0.228

5.214 ± 0.672

5.341 ± 0.947

9.378 ± 0.628

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.598 ± 0.277

4.794 ± 0.612

6.476 ± 0.808

3.574 ± 0.418

5.509 ± 0.988

7.317 ± 0.525

6.728 ± 0.686

5.929 ± 0.46

1.262 ± 0.251

3.574 ± 0.361
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski