Strawberry pallidosis-associated virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6JGW2|Q6JGW2_9CLOS Movement protein OS=Strawberry pallidosis-associated virus OX=227507 PE=4 SV=1
MM1 pKa = 7.59LFFVLIVSDD10 pKa = 3.4IGFNSYY16 pKa = 10.64YY17 pKa = 10.83LSDD20 pKa = 3.4NKK22 pKa = 10.44EE23 pKa = 4.12FEE25 pKa = 4.64GEE27 pKa = 4.34LIPIVTEE34 pKa = 3.87DD35 pKa = 3.42TTILIDD41 pKa = 3.99LLRR44 pKa = 11.84ICSFIKK50 pKa = 10.36EE51 pKa = 4.02RR52 pKa = 11.84WW53 pKa = 3.29

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6JGW3|Q6JGW3_9CLOS ORF 2 OS=Strawberry pallidosis-associated virus OX=227507 PE=4 SV=1
MM1 pKa = 7.85DD2 pKa = 5.24KK3 pKa = 10.9EE4 pKa = 4.37SALHH8 pKa = 5.59VLLVLWHH15 pKa = 6.16IVWHH19 pKa = 5.7AMCYY23 pKa = 9.54IYY25 pKa = 10.88VVSFTARR32 pKa = 11.84DD33 pKa = 3.18HH34 pKa = 6.54RR35 pKa = 11.84RR36 pKa = 11.84FVRR39 pKa = 11.84PPHH42 pKa = 5.66TPQFKK47 pKa = 10.23RR48 pKa = 11.84KK49 pKa = 8.8RR50 pKa = 11.84KK51 pKa = 9.44LPRR54 pKa = 11.84ILLNVLAFF62 pKa = 4.2

Molecular weight: 7.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

4980

53

2451

498.0

57.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.775 ± 0.453

1.968 ± 0.28

6.426 ± 0.332

5.823 ± 0.4

6.145 ± 0.484

4.639 ± 0.396

1.647 ± 0.28

7.309 ± 0.527

7.972 ± 0.304

9.598 ± 0.568

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.47 ± 0.37

6.606 ± 0.469

3.092 ± 0.166

2.229 ± 0.177

4.819 ± 0.294

8.454 ± 0.27

5.201 ± 0.372

6.747 ± 0.348

0.582 ± 0.081

4.498 ± 0.363
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski