Phaius virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B0I2Z6|B0I2Z6_9VIRU Coat protein OS=Phaius virus X OX=457382 PE=3 SV=1
MM1 pKa = 7.21EE2 pKa = 5.71AATGMARR9 pKa = 11.84SPYY12 pKa = 7.99TTAQQRR18 pKa = 11.84EE19 pKa = 4.66GATPTLTSSGLSWLFQGSSLPFIGLGLAALALALALGVSNPRR61 pKa = 11.84QCLITIDD68 pKa = 3.56GAGAILQGCGEE79 pKa = 4.3IQDD82 pKa = 4.18LPAVINALHH91 pKa = 5.65YY92 pKa = 10.89AKK94 pKa = 10.52GLSYY98 pKa = 10.9PNIRR102 pKa = 11.84NCEE105 pKa = 4.01YY106 pKa = 10.51GYY108 pKa = 10.57HH109 pKa = 5.05EE110 pKa = 4.84HH111 pKa = 7.1CEE113 pKa = 3.95QVRR116 pKa = 11.84SCEE119 pKa = 4.06HH120 pKa = 6.71ASLDD124 pKa = 4.06GPP126 pKa = 4.19

Molecular weight: 13.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B0I2Z5|B0I2Z5_9VIRU Movement protein TGBp3 OS=Phaius virus X OX=457382 PE=3 SV=1
MM1 pKa = 7.88PLQPPTDD8 pKa = 3.51YY9 pKa = 11.03TRR11 pKa = 11.84IYY13 pKa = 9.21SFLVIGVSCVTILYY27 pKa = 10.27LLTRR31 pKa = 11.84STLPHH36 pKa = 6.48VGDD39 pKa = 4.85NIHH42 pKa = 6.59HH43 pKa = 6.84LPHH46 pKa = 6.61GGCYY50 pKa = 9.29RR51 pKa = 11.84DD52 pKa = 3.79GTKK55 pKa = 10.28SIYY58 pKa = 10.12YY59 pKa = 10.04GSAKK63 pKa = 10.0RR64 pKa = 11.84GSHH67 pKa = 7.25PYY69 pKa = 9.39PDD71 pKa = 4.25KK72 pKa = 11.06LWAFLAISGLVFAIYY87 pKa = 6.92WTRR90 pKa = 11.84PRR92 pKa = 11.84RR93 pKa = 11.84ACPCTCPRR101 pKa = 11.84CVEE104 pKa = 4.27PSAVPNNNN112 pKa = 2.9

Molecular weight: 12.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1957

112

1298

391.4

43.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.249 ± 1.064

1.84 ± 0.779

4.65 ± 0.603

5.825 ± 0.8

4.139 ± 0.55

5.365 ± 1.279

3.577 ± 0.396

5.059 ± 0.341

5.161 ± 1.323

9.709 ± 1.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.402 ± 0.626

3.832 ± 0.417

6.745 ± 0.624

4.241 ± 0.617

4.803 ± 0.331

5.672 ± 0.548

7.001 ± 0.75

5.672 ± 0.738

1.175 ± 0.268

3.883 ± 0.443
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski