Streptomyces sp. ICC1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces; unclassified Streptomyces

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7671 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z4V3H0|A0A2Z4V3H0_9ACTN Radical SAM protein OS=Streptomyces sp. ICC1 OX=2099583 GN=DRB96_30260 PE=4 SV=1
MM1 pKa = 6.51ITMYY5 pKa = 10.56AWPSTADD12 pKa = 3.82GPDD15 pKa = 4.02ALPMVHH21 pKa = 6.59FTTDD25 pKa = 3.02QQAGGEE31 pKa = 4.23VTPDD35 pKa = 3.58GVPVWMFDD43 pKa = 3.09TAIRR47 pKa = 11.84DD48 pKa = 3.85GGWALFTDD56 pKa = 4.55FDD58 pKa = 3.87AWSVPAAGWQAFYY71 pKa = 10.85RR72 pKa = 11.84RR73 pKa = 11.84EE74 pKa = 4.0DD75 pKa = 3.52DD76 pKa = 3.66VLAVTGPGACAGWYY90 pKa = 9.61EE91 pKa = 4.35GGLGADD97 pKa = 4.14AEE99 pKa = 4.75WVGAAAARR107 pKa = 11.84QSVVLLAAPVQHH119 pKa = 6.96PSLYY123 pKa = 10.38AYY125 pKa = 10.12AVEE128 pKa = 4.55AGAAFALLVPLVVII142 pKa = 5.08

Molecular weight: 14.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z4UUW4|A0A2Z4UUW4_9ACTN Uncharacterized protein OS=Streptomyces sp. ICC1 OX=2099583 GN=DRB96_08905 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILANRR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.47GRR40 pKa = 11.84SALSAA45 pKa = 3.8

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7671

0

7671

2438377

21

3650

317.9

33.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.081 ± 0.046

0.816 ± 0.008

5.695 ± 0.02

5.594 ± 0.029

2.742 ± 0.016

9.758 ± 0.031

2.264 ± 0.014

3.191 ± 0.018

2.231 ± 0.024

10.327 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.013

1.787 ± 0.02

6.232 ± 0.026

2.713 ± 0.017

7.878 ± 0.03

5.115 ± 0.021

6.004 ± 0.033

8.221 ± 0.028

1.54 ± 0.011

2.051 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski