Terricaulis silvestris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Terricaulis

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3942 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I6MHR6|A0A6I6MHR6_9CAUL Fatty acid desaturase OS=Terricaulis silvestris OX=2686094 GN=DSM104635_01324 PE=4 SV=1
MM1 pKa = 7.54FIADD5 pKa = 4.93PEE7 pKa = 4.67LNWTNNWLGFNGYY20 pKa = 9.28GATTLIHH27 pKa = 6.43EE28 pKa = 5.28LGHH31 pKa = 6.54SIGLSHH37 pKa = 7.56PGAYY41 pKa = 10.04NFAPGIPLSYY51 pKa = 10.59LGLAEE56 pKa = 4.11YY57 pKa = 10.48AQDD60 pKa = 3.69SEE62 pKa = 4.89QYY64 pKa = 11.2SIMSYY69 pKa = 9.17WAPAEE74 pKa = 4.04TGAQILDD81 pKa = 3.93FSTFLFGNAQTPMLHH96 pKa = 7.23DD97 pKa = 4.02IYY99 pKa = 10.79VAQSIYY105 pKa = 10.89GADD108 pKa = 3.43PTTRR112 pKa = 11.84AGDD115 pKa = 3.71TIYY118 pKa = 11.0GFNSTAGRR126 pKa = 11.84DD127 pKa = 3.61AFDD130 pKa = 4.06FSSNAFPNVSIYY142 pKa = 10.74DD143 pKa = 3.39AGGNDD148 pKa = 4.19TIDD151 pKa = 3.22LSGFNASVFLDD162 pKa = 3.53LHH164 pKa = 6.9DD165 pKa = 4.58GAFSSGAQAAPTAAVVNANRR185 pKa = 11.84AALTALTDD193 pKa = 4.0GAQVFAPLTQAQIDD207 pKa = 3.59NTINIRR213 pKa = 11.84SGNHH217 pKa = 6.44AIFIQGDD224 pKa = 3.55TGVAGVRR231 pKa = 11.84ATAYY235 pKa = 10.22DD236 pKa = 4.01NLSIAYY242 pKa = 7.11GTVIEE247 pKa = 4.3NGIGGSQRR255 pKa = 11.84DD256 pKa = 4.06VLWGNEE262 pKa = 3.66VANRR266 pKa = 11.84LEE268 pKa = 4.1GRR270 pKa = 11.84GGNDD274 pKa = 2.93VLNGFEE280 pKa = 4.6GADD283 pKa = 3.67TLVGGAGNDD292 pKa = 3.52LFVLSVVEE300 pKa = 4.45SGDD303 pKa = 3.44KK304 pKa = 11.35VMDD307 pKa = 4.04FQTGLDD313 pKa = 4.38DD314 pKa = 3.89IDD316 pKa = 4.42LRR318 pKa = 11.84GTGIDD323 pKa = 3.49MTWIGGAAFSGVAGQVRR340 pKa = 11.84FASDD344 pKa = 3.52VLSVDD349 pKa = 3.12INGDD353 pKa = 3.24GVADD357 pKa = 4.59MIASVLGDD365 pKa = 4.26DD366 pKa = 5.41LVASDD371 pKa = 4.84VLILL375 pKa = 4.14

Molecular weight: 39.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I6MZJ7|A0A6I6MZJ7_9CAUL Uncharacterized protein OS=Terricaulis silvestris OX=2686094 GN=DSM104635_03403 PE=4 SV=1
MM1 pKa = 7.39AKK3 pKa = 9.86KK4 pKa = 10.06VKK6 pKa = 9.96KK7 pKa = 10.02ARR9 pKa = 11.84KK10 pKa = 5.98TAKK13 pKa = 8.58KK14 pKa = 8.52TKK16 pKa = 9.7ARR18 pKa = 11.84KK19 pKa = 8.54AAPKK23 pKa = 8.9KK24 pKa = 7.97TVRR27 pKa = 11.84KK28 pKa = 8.05AAKK31 pKa = 9.71RR32 pKa = 11.84KK33 pKa = 5.85TAKK36 pKa = 8.87KK37 pKa = 7.47TARR40 pKa = 11.84KK41 pKa = 7.71TKK43 pKa = 9.11VAKK46 pKa = 9.73KK47 pKa = 10.19AKK49 pKa = 8.05TARR52 pKa = 11.84KK53 pKa = 6.81PAKK56 pKa = 8.68RR57 pKa = 11.84KK58 pKa = 9.9KK59 pKa = 8.86MARR62 pKa = 11.84KK63 pKa = 6.67TKK65 pKa = 10.3KK66 pKa = 9.92VVAPPVAMM74 pKa = 5.03

Molecular weight: 8.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3942

0

3942

1171740

29

3256

297.2

32.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.785 ± 0.065

0.81 ± 0.012

5.765 ± 0.03

5.925 ± 0.036

3.787 ± 0.024

8.462 ± 0.044

1.882 ± 0.018

4.931 ± 0.026

2.914 ± 0.039

9.521 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.329 ± 0.018

2.69 ± 0.025

5.19 ± 0.026

3.182 ± 0.021

7.518 ± 0.044

5.232 ± 0.025

5.178 ± 0.028

7.223 ± 0.033

1.449 ± 0.017

2.228 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski