Yoonia vestfoldensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Yoonia

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3889 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0E8N9|A0A1Y0E8N9_9RHOB EamA-like transporter family protein OS=Yoonia vestfoldensis OX=245188 GN=LOKVESSMR4R_00641 PE=4 SV=1
MM1 pKa = 7.74PGYY4 pKa = 10.86AYY6 pKa = 11.19LLDD9 pKa = 4.13SYY11 pKa = 11.99VNADD15 pKa = 3.3YY16 pKa = 9.15TADD19 pKa = 3.52LVRR22 pKa = 11.84THH24 pKa = 6.82SIVGVPYY31 pKa = 9.49TEE33 pKa = 5.82DD34 pKa = 3.87MITLAAADD42 pKa = 4.11VLAQADD48 pKa = 4.61PDD50 pKa = 3.58TDD52 pKa = 4.1AYY54 pKa = 11.21DD55 pKa = 4.44DD56 pKa = 4.01LLEE59 pKa = 4.95RR60 pKa = 11.84YY61 pKa = 9.05PGAQIRR67 pKa = 11.84NFDD70 pKa = 3.49GRR72 pKa = 11.84PGVSEE77 pKa = 3.99MDD79 pKa = 3.38ALIAYY84 pKa = 8.62LQMLGTTVDD93 pKa = 4.64FSTFTPDD100 pKa = 3.23ASRR103 pKa = 4.15

Molecular weight: 11.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0EDL7|A0A1Y0EDL7_9RHOB Uncharacterized protein OS=Yoonia vestfoldensis OX=245188 GN=LOKVESSMR4R_02063 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 8.99NRR15 pKa = 11.84HH16 pKa = 3.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.35GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3889

0

3889

1188150

30

3063

305.5

33.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.166 ± 0.062

0.899 ± 0.013

6.359 ± 0.033

4.777 ± 0.039

3.655 ± 0.026

8.415 ± 0.036

2.079 ± 0.021

5.554 ± 0.026

2.985 ± 0.035

10.12 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.85 ± 0.019

2.568 ± 0.024

5.04 ± 0.031

3.632 ± 0.023

6.628 ± 0.036

4.934 ± 0.034

5.641 ± 0.033

7.13 ± 0.03

1.37 ± 0.02

2.198 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski