Xylella phage Cota

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; unclassified Autographiviridae

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 51 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6F8ZKP3|A0A6F8ZKP3_9CAUD DNA polymerase I phage-associated OS=Xylella phage Cota OX=2699877 PE=4 SV=1
MM1 pKa = 7.94AINDD5 pKa = 3.81PNYY8 pKa = 10.58RR9 pKa = 11.84YY10 pKa = 8.06ATQTWEE16 pKa = 3.8ADD18 pKa = 3.74GVRR21 pKa = 11.84TQYY24 pKa = 11.31DD25 pKa = 3.22IAFDD29 pKa = 3.37GGYY32 pKa = 9.5IRR34 pKa = 11.84QSDD37 pKa = 4.05VVAFSVLVDD46 pKa = 3.8EE47 pKa = 4.97DD48 pKa = 3.9TGLTTDD54 pKa = 3.71RR55 pKa = 11.84QIHH58 pKa = 5.38PVVFLSEE65 pKa = 4.41SVDD68 pKa = 4.7PEE70 pKa = 4.7TEE72 pKa = 3.57WKK74 pKa = 7.94TAQVQITPAVPAGRR88 pKa = 11.84RR89 pKa = 11.84VVIFRR94 pKa = 11.84STEE97 pKa = 3.37KK98 pKa = 10.68SAALVNYY105 pKa = 8.39TNGSILTEE113 pKa = 4.18KK114 pKa = 10.89NLDD117 pKa = 3.68LANDD121 pKa = 3.48QSVFGIAEE129 pKa = 3.86IMDD132 pKa = 4.19GLNAARR138 pKa = 11.84IDD140 pKa = 3.7INSQVQEE147 pKa = 4.4VIDD150 pKa = 4.1MNQLIQEE157 pKa = 4.57LYY159 pKa = 8.82EE160 pKa = 4.14QIIEE164 pKa = 4.07LLAAGGIVSVAPRR177 pKa = 11.84VWFGTGNGEE186 pKa = 4.1DD187 pKa = 3.42TDD189 pKa = 4.38FPLVGADD196 pKa = 3.21VDD198 pKa = 4.05GSGFYY203 pKa = 9.44DD204 pKa = 3.89TYY206 pKa = 10.75IGGVGMEE213 pKa = 4.85PDD215 pKa = 3.15TDD217 pKa = 3.7YY218 pKa = 11.56AIIMGEE224 pKa = 4.4TIADD228 pKa = 3.52TLIRR232 pKa = 11.84FTVPPADD239 pKa = 3.32GVRR242 pKa = 11.84WFTVLRR248 pKa = 11.84GYY250 pKa = 10.57AKK252 pKa = 10.06PYY254 pKa = 9.3TGPQPVVSLSMPVIDD269 pKa = 5.71VPDD272 pKa = 3.88PQYY275 pKa = 10.99FIGKK279 pKa = 7.94EE280 pKa = 3.8SEE282 pKa = 4.36YY283 pKa = 11.54ALLRR287 pKa = 11.84ALNDD291 pKa = 3.43TEE293 pKa = 4.01ATFFVKK299 pKa = 10.38EE300 pKa = 4.16IPISGDD306 pKa = 3.27PANKK310 pKa = 10.23LGDD313 pKa = 3.61GSYY316 pKa = 11.42VSITQRR322 pKa = 11.84GAAQVVLEE330 pKa = 4.59PDD332 pKa = 3.29TAEE335 pKa = 3.96VQLIVPAGYY344 pKa = 10.41LPATRR349 pKa = 11.84ALNSVISITCEE360 pKa = 3.9YY361 pKa = 10.79GDD363 pKa = 3.7GNAWIVSGDD372 pKa = 3.62LAKK375 pKa = 10.53EE376 pKa = 3.88

Molecular weight: 40.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6F8ZKJ8|A0A6F8ZKJ8_9CAUD Uncharacterized protein OS=Xylella phage Cota OX=2699877 PE=4 SV=1
MM1 pKa = 7.45LRR3 pKa = 11.84NLINRR8 pKa = 11.84LLRR11 pKa = 11.84PLLAQRR17 pKa = 11.84YY18 pKa = 6.97IVRR21 pKa = 11.84LEE23 pKa = 3.95PFVLADD29 pKa = 3.67LRR31 pKa = 11.84RR32 pKa = 11.84KK33 pKa = 10.16VGGTCIVTSQTTEE46 pKa = 3.45HH47 pKa = 6.09MAGYY51 pKa = 9.74QLGIAHH57 pKa = 6.71VLNVLQEE64 pKa = 4.62GYY66 pKa = 8.49TVSRR70 pKa = 11.84SS71 pKa = 3.24

Molecular weight: 8.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

51

0

51

12465

44

1490

244.4

27.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.413 ± 0.575

0.85 ± 0.142

6.378 ± 0.231

6.45 ± 0.297

3.506 ± 0.179

7.942 ± 0.375

1.821 ± 0.209

4.822 ± 0.226

4.765 ± 0.318

7.95 ± 0.247

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.688 ± 0.169

4.099 ± 0.185

4.108 ± 0.178

4.3 ± 0.294

6.611 ± 0.302

5.552 ± 0.275

6.081 ± 0.287

6.611 ± 0.315

1.621 ± 0.114

3.434 ± 0.164
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski