Lachancea dasiensis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5089 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G4JBL8|A0A1G4JBL8_9SACH LADA_0E02894g1_1 OS=Lachancea dasiensis OX=1072105 GN=LADA_0E02894G PE=3 SV=1
MM1 pKa = 7.69RR2 pKa = 11.84AGLFFSALMAVATASPVALNDD23 pKa = 3.39FVKK26 pKa = 10.43RR27 pKa = 11.84DD28 pKa = 3.72SEE30 pKa = 4.31DD31 pKa = 3.45FDD33 pKa = 6.18PIEE36 pKa = 4.26AWPGNWTLSNWSNWTNSSNVTQWEE60 pKa = 4.54SPKK63 pKa = 10.55LQVFITGGHH72 pKa = 5.67YY73 pKa = 10.53KK74 pKa = 10.51LSNWTSSPDD83 pKa = 3.38VTITSLFNQTSLNATEE99 pKa = 5.02LYY101 pKa = 10.54SVASSVSKK109 pKa = 10.91SLASDD114 pKa = 4.15AYY116 pKa = 8.93TGVVVLGHH124 pKa = 6.12EE125 pKa = 4.4KK126 pKa = 10.61ALEE129 pKa = 3.95SLGFFLSVVVDD140 pKa = 3.95SPKK143 pKa = 10.99SLVVTSKK150 pKa = 11.06LDD152 pKa = 4.09DD153 pKa = 4.33GLTVAWSDD161 pKa = 3.64DD162 pKa = 3.53SWWRR166 pKa = 11.84GTLIVDD172 pKa = 3.17QTLIYY177 pKa = 10.24SGAVYY182 pKa = 9.57TPSTPGAVSIGAVYY196 pKa = 10.73DD197 pKa = 3.4KK198 pKa = 11.1TPWFWFTPAWPMLLSPEE215 pKa = 4.08STIRR219 pKa = 11.84TEE221 pKa = 3.86YY222 pKa = 10.63WNFTDD227 pKa = 5.56VIQANSTISTNGTTIPIVYY246 pKa = 9.51DD247 pKa = 3.77AYY249 pKa = 11.28YY250 pKa = 11.01NPGLLEE256 pKa = 4.03YY257 pKa = 10.58LSGSIDD263 pKa = 3.41GLVVVSSGNSTGSEE277 pKa = 4.24FTSASIPIVFASDD290 pKa = 3.15DD291 pKa = 4.11YY292 pKa = 11.85YY293 pKa = 10.65PVFVDD298 pKa = 5.12DD299 pKa = 4.63VPAGAIAAGGLSPVQSQLLLAIALTNNVTASSQLQDD335 pKa = 2.85IFFSS339 pKa = 3.76

Molecular weight: 36.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G4JN28|A0A1G4JN28_9SACH LADA_0F14092g1_1 OS=Lachancea dasiensis OX=1072105 GN=LADA_0F14092G PE=3 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.09WRR6 pKa = 11.84KK7 pKa = 8.87KK8 pKa = 8.73RR9 pKa = 11.84VRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 9.71RR15 pKa = 11.84KK16 pKa = 8.27RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 9.19VRR21 pKa = 11.84ARR23 pKa = 11.84SKK25 pKa = 10.98

Molecular weight: 3.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5089

0

5089

2476411

25

4926

486.6

54.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.735 ± 0.029

1.323 ± 0.012

5.76 ± 0.025

6.529 ± 0.033

4.353 ± 0.023

5.687 ± 0.032

2.313 ± 0.015

5.454 ± 0.023

6.292 ± 0.029

9.932 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.067 ± 0.011

4.732 ± 0.018

4.521 ± 0.025

4.279 ± 0.024

5.074 ± 0.022

8.988 ± 0.042

5.519 ± 0.02

6.256 ± 0.023

1.103 ± 0.012

3.083 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski