Corynebacterium pseudotuberculosis (strain C231)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium pseudotuberculosis

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2001 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D9QB02|D9QB02_CORP2 Phosphatidylglycerophosphate synthase OS=Corynebacterium pseudotuberculosis (strain C231) OX=681645 GN=pgsA1 PE=3 SV=1
MM1 pKa = 7.12STDD4 pKa = 3.63LLSIGMTFDD13 pKa = 2.91KK14 pKa = 10.66WQDD17 pKa = 3.12AVEE20 pKa = 3.98AAIATDD26 pKa = 3.42KK27 pKa = 11.17LAVTGEE33 pKa = 4.0VRR35 pKa = 11.84GGQLIQYY42 pKa = 9.59ADD44 pKa = 3.77DD45 pKa = 4.58SGAQINILAVEE56 pKa = 4.34PFATFAGFDD65 pKa = 3.54SVTQSFAHH73 pKa = 6.19ISMVNDD79 pKa = 3.01VLALCEE85 pKa = 3.84IVDD88 pKa = 3.91YY89 pKa = 11.17NGQEE93 pKa = 4.23VTTVACNLAQGPLLVDD109 pKa = 3.51EE110 pKa = 5.51PEE112 pKa = 4.32QRR114 pKa = 11.84WQQLGLSALAFDD126 pKa = 5.03VITYY130 pKa = 7.26PTIADD135 pKa = 4.31FEE137 pKa = 4.44QASPEE142 pKa = 3.81ILGTVVSEE150 pKa = 4.38GALTVMSGNGTAAPDD165 pKa = 3.26AFATFNVRR173 pKa = 11.84VLSAEE178 pKa = 3.79YY179 pKa = 8.57RR180 pKa = 11.84TNTLTGSRR188 pKa = 11.84FIHH191 pKa = 5.91ATVDD195 pKa = 3.44GPFPFDD201 pKa = 3.14VCLPDD206 pKa = 4.3AASLPEE212 pKa = 4.58RR213 pKa = 11.84DD214 pKa = 3.62SVISGKK220 pKa = 10.35AVLVGSVSVPEE231 pKa = 4.2SGGCGSGGGGCGSGGCGCGGHH252 pKa = 6.68

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D9QE58|D9QE58_CORP2 Thiol-disulfide isomerase/thioredoxin OS=Corynebacterium pseudotuberculosis (strain C231) OX=681645 GN=ccsX PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.72HH17 pKa = 5.63RR18 pKa = 11.84KK19 pKa = 7.56LLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2001

0

2001

659651

33

3032

329.7

35.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.92 ± 0.065

0.808 ± 0.015

5.631 ± 0.048

6.069 ± 0.059

3.456 ± 0.033

8.052 ± 0.052

2.263 ± 0.028

5.733 ± 0.045

3.896 ± 0.052

9.661 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.234 ± 0.025

3.121 ± 0.032

4.84 ± 0.032

3.352 ± 0.028

5.814 ± 0.052

6.5 ± 0.042

5.965 ± 0.035

8.088 ± 0.044

1.345 ± 0.024

2.25 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski