Catenovulum agarivorans DS-2

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Catenovulum; Catenovulum agarivorans

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3835 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W7QEY9|W7QEY9_9ALTE L-rhamnose mutarotase OS=Catenovulum agarivorans DS-2 OX=1328313 GN=rhaM PE=3 SV=1
MM1 pKa = 7.36SLSACKK7 pKa = 9.1DD8 pKa = 3.41TKK10 pKa = 11.14VDD12 pKa = 3.21IDD14 pKa = 3.98PPEE17 pKa = 4.52EE18 pKa = 3.98PTPAPSPTPTPTPTPTPTPTPANTAPTVDD47 pKa = 4.0MLDD50 pKa = 3.51SATVEE55 pKa = 3.83QGLSIEE61 pKa = 4.5LNWTISDD68 pKa = 4.08AEE70 pKa = 4.1QDD72 pKa = 3.67NLTCEE77 pKa = 3.91IDD79 pKa = 4.58AGDD82 pKa = 4.01SSNPIAITDD91 pKa = 3.61CAYY94 pKa = 9.76TGKK97 pKa = 7.64TTLTYY102 pKa = 10.31SEE104 pKa = 4.41SGQYY108 pKa = 9.44QIKK111 pKa = 8.21FTADD115 pKa = 3.15DD116 pKa = 4.61GEE118 pKa = 4.49FSSEE122 pKa = 3.59QTLNITISQPAPQFTLAASATAPAALYY149 pKa = 10.74LRR151 pKa = 11.84GFNDD155 pKa = 4.66DD156 pKa = 3.85WDD158 pKa = 4.11TTNPFTLHH166 pKa = 6.63DD167 pKa = 5.09GIYY170 pKa = 10.42VIEE173 pKa = 4.29FDD175 pKa = 3.96GTFAQQMVKK184 pKa = 10.18VASEE188 pKa = 3.84DD189 pKa = 3.24WSAVNCGGFALSANTAPVDD208 pKa = 4.01LTCGGNPDD216 pKa = 3.6NGSITFEE223 pKa = 3.65EE224 pKa = 4.47DD225 pKa = 2.5ALYY228 pKa = 10.49RR229 pKa = 11.84IGVSYY234 pKa = 10.92QDD236 pKa = 4.42DD237 pKa = 4.09GSAQMQMLKK246 pKa = 9.96IVDD249 pKa = 4.33PLPDD253 pKa = 3.57EE254 pKa = 5.03SGLGQAGTLNIHH266 pKa = 5.98YY267 pKa = 8.97LHH269 pKa = 6.91SSEE272 pKa = 5.7SYY274 pKa = 10.65SGWGLHH280 pKa = 5.69IWGDD284 pKa = 4.04AIDD287 pKa = 4.39PSIATTWQAPRR298 pKa = 11.84PYY300 pKa = 10.99AEE302 pKa = 5.34LKK304 pKa = 10.41DD305 pKa = 5.63DD306 pKa = 3.81YY307 pKa = 11.25AIWQVPIEE315 pKa = 4.49DD316 pKa = 4.25ANSAFNFIMHH326 pKa = 6.88FGDD329 pKa = 4.18VKK331 pKa = 10.9STDD334 pKa = 3.24SDD336 pKa = 3.91LSIVANSFGTDD347 pKa = 2.05IWIVQDD353 pKa = 3.24TATIYY358 pKa = 11.2NNEE361 pKa = 3.72TDD363 pKa = 4.57ARR365 pKa = 11.84AAYY368 pKa = 10.35NSLLQNLGNQSANLDD383 pKa = 3.83LSDD386 pKa = 3.62VTTTDD391 pKa = 2.91TSSALADD398 pKa = 3.45GWVDD402 pKa = 3.31SAQFAQIYY410 pKa = 8.62VRR412 pKa = 11.84AYY414 pKa = 9.96QDD416 pKa = 3.04SDD418 pKa = 3.47GDD420 pKa = 4.24GVGDD424 pKa = 3.61IQGLISRR431 pKa = 11.84LDD433 pKa = 3.54YY434 pKa = 11.48LKK436 pKa = 11.17DD437 pKa = 3.47NGIDD441 pKa = 4.34AIWLMPMMEE450 pKa = 4.92SSDD453 pKa = 3.77NDD455 pKa = 3.31HH456 pKa = 7.09GYY458 pKa = 8.7ATTDD462 pKa = 3.19YY463 pKa = 11.01RR464 pKa = 11.84KK465 pKa = 9.54IEE467 pKa = 4.06SDD469 pKa = 3.69YY470 pKa = 11.73GSLDD474 pKa = 3.49DD475 pKa = 6.43FKK477 pKa = 11.77ALLAEE482 pKa = 3.97AHH484 pKa = 6.07NRR486 pKa = 11.84DD487 pKa = 3.21MAIILDD493 pKa = 3.82YY494 pKa = 11.09VINHH498 pKa = 6.33SSNQNPLFADD508 pKa = 3.76AMSSANNDD516 pKa = 2.69KK517 pKa = 10.66RR518 pKa = 11.84DD519 pKa = 3.28WYY521 pKa = 10.02IIQADD526 pKa = 4.62KK527 pKa = 10.88PLGWNIWGGDD537 pKa = 3.59PWRR540 pKa = 11.84SSPGGAYY547 pKa = 9.62YY548 pKa = 10.83AAFADD553 pKa = 4.08SMPDD557 pKa = 3.36FDD559 pKa = 5.03LTNPDD564 pKa = 3.42VIAFHH569 pKa = 6.35QNNLKK574 pKa = 10.08FWLNMGVDD582 pKa = 4.3GFRR585 pKa = 11.84FDD587 pKa = 3.45AVGVLVEE594 pKa = 4.17NGKK597 pKa = 9.63DD598 pKa = 3.33ALEE601 pKa = 4.57DD602 pKa = 3.35QPEE605 pKa = 3.92NHH607 pKa = 6.79VIMKK611 pKa = 8.56TMKK614 pKa = 9.72DD615 pKa = 3.42TIEE618 pKa = 4.76SYY620 pKa = 10.31DD621 pKa = 3.28NRR623 pKa = 11.84YY624 pKa = 8.75IVCEE628 pKa = 4.18SPSGYY633 pKa = 10.79AAFANDD639 pKa = 3.74NSCGRR644 pKa = 11.84AFNFSAGHH652 pKa = 7.13AILGMVDD659 pKa = 3.48TGVVWDD665 pKa = 4.24EE666 pKa = 4.55LLTEE670 pKa = 4.62LAASNTDD677 pKa = 3.44QMPMILANHH686 pKa = 6.9DD687 pKa = 3.6FFAGDD692 pKa = 3.67RR693 pKa = 11.84VWNQLSGNVAQYY705 pKa = 11.24KK706 pKa = 9.77LAAATYY712 pKa = 10.02LLASSNPFTYY722 pKa = 10.32YY723 pKa = 10.84GEE725 pKa = 4.62EE726 pKa = 3.95IGLAAADD733 pKa = 4.17NLSGDD738 pKa = 3.32WSIRR742 pKa = 11.84TPMSWTDD749 pKa = 3.26DD750 pKa = 3.52TNNAGFTTGTPFRR763 pKa = 11.84DD764 pKa = 3.31LSSNVASNNVTAQLANADD782 pKa = 3.97SLLNYY787 pKa = 9.94YY788 pKa = 10.15RR789 pKa = 11.84DD790 pKa = 3.77LYY792 pKa = 9.54QVRR795 pKa = 11.84NDD797 pKa = 3.42HH798 pKa = 6.48SVIATGILNVQSSGGDD814 pKa = 3.17EE815 pKa = 4.07VLKK818 pKa = 10.6LVRR821 pKa = 11.84TGTGTEE827 pKa = 3.69AVILINYY834 pKa = 9.39SDD836 pKa = 4.11GDD838 pKa = 3.61EE839 pKa = 4.34SVTVDD844 pKa = 3.43VTHH847 pKa = 7.51DD848 pKa = 3.4NAVYY852 pKa = 10.0TDD854 pKa = 4.1EE855 pKa = 6.15LSDD858 pKa = 4.14LADD861 pKa = 4.26AGASSSGQLTVIVPAQSAAVFVLTVANN888 pKa = 4.03

Molecular weight: 96.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W7QVH6|W7QVH6_9ALTE Uncharacterized protein OS=Catenovulum agarivorans DS-2 OX=1328313 GN=DS2_02830 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.14RR12 pKa = 11.84KK13 pKa = 9.13RR14 pKa = 11.84SHH16 pKa = 6.17GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.94GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3835

0

3835

1380918

28

3888

360.1

40.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.67 ± 0.038

0.977 ± 0.013

5.694 ± 0.037

5.869 ± 0.036

4.253 ± 0.022

6.316 ± 0.038

2.23 ± 0.021

6.427 ± 0.03

5.658 ± 0.04

9.978 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.198 ± 0.018

5.031 ± 0.035

3.726 ± 0.024

5.543 ± 0.046

3.955 ± 0.028

6.585 ± 0.04

5.449 ± 0.042

6.742 ± 0.037

1.303 ± 0.017

3.396 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski