Corynebacterium falsenii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia;

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2134 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A418Q5Y0|A0A418Q5Y0_9CORY Superoxide dismutase OS=Corynebacterium falsenii OX=108486 GN=D3M95_08565 PE=3 SV=1
MM1 pKa = 7.35PVEE4 pKa = 4.72HH5 pKa = 6.79YY6 pKa = 10.89FDD8 pKa = 4.49FSGDD12 pKa = 3.6GFNDD16 pKa = 3.21PLAPLEE22 pKa = 4.08PTGPDD27 pKa = 3.44GLTTSYY33 pKa = 11.05GNHH36 pKa = 6.3GFLVDD41 pKa = 4.01PLGGIDD47 pKa = 4.83DD48 pKa = 4.98PSDD51 pKa = 3.37ATSIRR56 pKa = 11.84PPIIPEE62 pKa = 4.32GPPPANPLEE71 pKa = 4.02HH72 pKa = 7.22LINSPHH78 pKa = 5.73VQLAPHH84 pKa = 7.08PEE86 pKa = 4.0AGGEE90 pKa = 4.4VNSEE94 pKa = 3.68MAYY97 pKa = 11.04LFFDD101 pKa = 4.05YY102 pKa = 10.78NGQRR106 pKa = 11.84YY107 pKa = 8.29AVGAPTTTGTVEE119 pKa = 4.64SITLADD125 pKa = 3.96DD126 pKa = 3.32TTMNILSDD134 pKa = 3.74TNGDD138 pKa = 3.23GRR140 pKa = 11.84VDD142 pKa = 3.82YY143 pKa = 10.78LSSVCFQGGWSAWSAVEE160 pKa = 4.43DD161 pKa = 4.12EE162 pKa = 4.43EE163 pKa = 6.08AGGVEE168 pKa = 4.6EE169 pKa = 4.52KK170 pKa = 10.3TSDD173 pKa = 3.88SEE175 pKa = 4.49QPPATPDD182 pKa = 2.91GGQQEE187 pKa = 4.9WKK189 pKa = 9.09TEE191 pKa = 3.45TWKK194 pKa = 10.92CVEE197 pKa = 4.22RR198 pKa = 11.84GDD200 pKa = 3.8WGG202 pKa = 3.54

Molecular weight: 21.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A418Q9D5|A0A418Q9D5_9CORY Iron ABC transporter permease OS=Corynebacterium falsenii OX=108486 GN=D3M95_02630 PE=3 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.22GRR42 pKa = 11.84KK43 pKa = 9.07SLTAA47 pKa = 4.07

Molecular weight: 5.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2134

0

2134

748884

30

3170

350.9

37.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.604 ± 0.059

0.695 ± 0.013

6.278 ± 0.044

6.071 ± 0.052

3.159 ± 0.034

8.579 ± 0.046

2.232 ± 0.025

4.853 ± 0.042

3.334 ± 0.041

9.056 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.292 ± 0.02

2.942 ± 0.026

5.199 ± 0.039

3.422 ± 0.032

6.298 ± 0.048

6.054 ± 0.037

6.221 ± 0.042

8.178 ± 0.044

1.411 ± 0.022

2.12 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski