Lentibacillus cibarius

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lentibacillus

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3079 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A549YJV1|A0A549YJV1_9BACI MATE family efflux transporter OS=Lentibacillus cibarius OX=2583219 GN=FH966_10990 PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 10.4KK3 pKa = 10.49GLLAMLVLGLALFLAACGGGDD24 pKa = 3.81SNDD27 pKa = 3.77SNGSDD32 pKa = 3.28EE33 pKa = 4.3TGNDD37 pKa = 3.34GGDD40 pKa = 3.43AAEE43 pKa = 4.4TAGSTMDD50 pKa = 3.24VTATNFSFDD59 pKa = 3.48KK60 pKa = 11.16DD61 pKa = 3.92EE62 pKa = 4.27YY63 pKa = 9.49TVPAGEE69 pKa = 4.42EE70 pKa = 4.26VTVSLTNEE78 pKa = 3.91EE79 pKa = 4.08GMHH82 pKa = 6.86GIGIDD87 pKa = 3.5EE88 pKa = 4.46FDD90 pKa = 3.85VNIEE94 pKa = 4.21GEE96 pKa = 4.49GEE98 pKa = 4.0ATFTPEE104 pKa = 3.8EE105 pKa = 4.23PGEE108 pKa = 3.94YY109 pKa = 9.11TIYY112 pKa = 10.81CSVPCGQGHH121 pKa = 7.53ADD123 pKa = 3.33MKK125 pKa = 9.99STLVVEE131 pKa = 4.81

Molecular weight: 13.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A549YGW5|A0A549YGW5_9BACI Sporulation protein YabP OS=Lentibacillus cibarius OX=2583219 GN=yabP PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 10.42RR3 pKa = 11.84PFQPNNRR10 pKa = 11.84KK11 pKa = 9.19RR12 pKa = 11.84KK13 pKa = 8.49KK14 pKa = 8.63VHH16 pKa = 5.57GFRR19 pKa = 11.84KK20 pKa = 10.0RR21 pKa = 11.84MSTKK25 pKa = 10.48DD26 pKa = 2.94GRR28 pKa = 11.84QVLKK32 pKa = 10.25RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.96GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3079

0

3079

883714

26

1431

287.0

32.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.431 ± 0.047

0.678 ± 0.014

5.768 ± 0.039

7.168 ± 0.054

4.31 ± 0.041

6.939 ± 0.045

2.189 ± 0.021

7.414 ± 0.044

6.357 ± 0.043

9.362 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.054 ± 0.025

4.437 ± 0.033

3.697 ± 0.03

4.01 ± 0.036

4.172 ± 0.032

5.805 ± 0.032

5.701 ± 0.023

7.043 ± 0.039

1.029 ± 0.016

3.436 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski