Yersinia phage YeP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 61 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6B577|A0A5J6B577_9CAUD SOS-response repressor and protease OS=Yersinia phage YeP1 OX=2562809 PE=3 SV=1
MM1 pKa = 7.54ANVEE5 pKa = 4.57AKK7 pKa = 9.82WSVDD11 pKa = 3.78LYY13 pKa = 10.94VEE15 pKa = 4.55CPKK18 pKa = 11.09CGDD21 pKa = 3.71FFDD24 pKa = 5.69LNSDD28 pKa = 3.69DD29 pKa = 4.07TFTDD33 pKa = 3.99GTHH36 pKa = 6.97GYY38 pKa = 10.56ALQTTVDD45 pKa = 3.57VDD47 pKa = 4.11AEE49 pKa = 4.29CPEE52 pKa = 4.77CGHH55 pKa = 6.49KK56 pKa = 10.58FKK58 pKa = 11.29ADD60 pKa = 3.87LVWW63 pKa = 5.16

Molecular weight: 7.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5K1KD70|A0A5K1KD70_9CAUD Uncharacterized protein OS=Yersinia phage YeP1 OX=2562809 PE=4 SV=1
MM1 pKa = 7.59GIEE4 pKa = 4.1NSTSGLYY11 pKa = 10.44LHH13 pKa = 7.14VDD15 pKa = 4.22FDD17 pKa = 4.23KK18 pKa = 11.3PKK20 pKa = 10.47EE21 pKa = 3.94LEE23 pKa = 4.13FNQKK27 pKa = 8.43RR28 pKa = 11.84VRR30 pKa = 11.84NAFAKK35 pKa = 10.18VGRR38 pKa = 11.84GVQDD42 pKa = 3.14EE43 pKa = 4.02ARR45 pKa = 11.84RR46 pKa = 11.84LVARR50 pKa = 11.84HH51 pKa = 6.53AISKK55 pKa = 10.37AGEE58 pKa = 4.01APGTRR63 pKa = 11.84TGGLSKK69 pKa = 10.82SIGYY73 pKa = 8.76KK74 pKa = 9.99VPSPSGGRR82 pKa = 11.84PGFMVRR88 pKa = 11.84IAPNQKK94 pKa = 8.95GGRR97 pKa = 11.84RR98 pKa = 11.84ATRR101 pKa = 11.84LPSGDD106 pKa = 3.89DD107 pKa = 3.83FYY109 pKa = 11.08PAFLFYY115 pKa = 10.7GVKK118 pKa = 10.27SKK120 pKa = 11.17AKK122 pKa = 9.74RR123 pKa = 11.84GRR125 pKa = 11.84SHH127 pKa = 7.37RR128 pKa = 11.84KK129 pKa = 8.12GASGGSGWKK138 pKa = 9.17IAPRR142 pKa = 11.84KK143 pKa = 10.32NFMTEE148 pKa = 3.29ALEE151 pKa = 4.43NRR153 pKa = 11.84RR154 pKa = 11.84LWAEE158 pKa = 3.89KK159 pKa = 10.88VLFSALKK166 pKa = 9.81KK167 pKa = 10.29SVVVKK172 pKa = 10.76

Molecular weight: 18.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

61

0

61

12052

38

626

197.6

21.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.102 ± 0.417

1.278 ± 0.163

5.899 ± 0.262

6.057 ± 0.278

3.626 ± 0.243

7.393 ± 0.232

1.676 ± 0.168

6.09 ± 0.22

5.551 ± 0.394

9.003 ± 0.325

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.746 ± 0.176

4.24 ± 0.163

4.588 ± 0.212

3.784 ± 0.231

5.451 ± 0.32

6.256 ± 0.244

6.115 ± 0.305

6.605 ± 0.247

1.518 ± 0.131

3.02 ± 0.21
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski