Hamiltosporidium tvaerminnensis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Microsporidia; Pansporoblastina; Dubosqiidae; Hamiltosporidium

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5820 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q9LPJ8|A0A4Q9LPJ8_9MICR Uncharacterized protein OS=Hamiltosporidium tvaerminnensis OX=1176355 GN=CWI38_1824p0010 PE=4 SV=1
MM1 pKa = 7.44IISWLSLYY9 pKa = 11.23LLFTYY14 pKa = 10.75VMIVKK19 pKa = 9.75PNEE22 pKa = 3.92SDD24 pKa = 4.2SIQAPGSYY32 pKa = 9.63IYY34 pKa = 10.19TLYY37 pKa = 11.39GNLNTDD43 pKa = 3.63EE44 pKa = 4.96GPNSGSGFTRR54 pKa = 11.84TNSGGNGMDD63 pKa = 3.44NSPVNGFNAHH73 pKa = 6.34SFTNNYY79 pKa = 9.23FPLDD83 pKa = 3.79NPSVIGLWFGLNDD96 pKa = 3.6AFEE99 pKa = 4.55TVAPVSMDD107 pKa = 3.16QTNGTNDD114 pKa = 3.54LADD117 pKa = 3.72YY118 pKa = 8.83TPNDD122 pKa = 4.2SITFGNNGIEE132 pKa = 4.22EE133 pKa = 4.51SEE135 pKa = 5.05IMDD138 pKa = 4.1QTNMDD143 pKa = 4.02TNSTYY148 pKa = 10.76QSTMFCGNGDD158 pKa = 3.85SVALGSAAMEE168 pKa = 3.89QNIIDD173 pKa = 4.0EE174 pKa = 4.75DD175 pKa = 4.52RR176 pKa = 11.84NSDD179 pKa = 3.69MLVEE183 pKa = 4.46NQNHH187 pKa = 6.84DD188 pKa = 3.48NPLFLGSTVDD198 pKa = 3.37EE199 pKa = 4.16ATKK202 pKa = 10.62NGRR205 pKa = 11.84QLYY208 pKa = 6.07TTSLSDD214 pKa = 3.81KK215 pKa = 10.83DD216 pKa = 4.65DD217 pKa = 4.51LFFLDD222 pKa = 4.37EE223 pKa = 4.99LDD225 pKa = 4.61LVFISDD231 pKa = 4.79AIEE234 pKa = 4.22SKK236 pKa = 10.63IKK238 pKa = 10.67

Molecular weight: 26.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q9KQL9|A0A4Q9KQL9_9MICR Putative subunit 2 of mRNA decapping complex OS=Hamiltosporidium tvaerminnensis OX=1176355 GN=CWI37_2600p0020 PE=3 SV=1
MM1 pKa = 7.1NRR3 pKa = 11.84KK4 pKa = 9.08KK5 pKa = 10.83LFLWIIQLTIILNFIKK21 pKa = 10.4RR22 pKa = 11.84VSKK25 pKa = 11.06VNAGYY30 pKa = 10.07SRR32 pKa = 11.84RR33 pKa = 11.84SYY35 pKa = 10.43SSRR38 pKa = 11.84NIRR41 pKa = 11.84RR42 pKa = 11.84SSGCSGGRR50 pKa = 11.84QGGGGCKK57 pKa = 10.08GGSCSGGRR65 pKa = 11.84QGGGGCKK72 pKa = 10.08GGSCSGGRR80 pKa = 11.84QGGGGCKK87 pKa = 10.08GGSCSGGRR95 pKa = 11.84QGGGGCKK102 pKa = 10.08GGSCSGGRR110 pKa = 11.84QGGGGGCSSCGGGGCSSCGGRR131 pKa = 11.84NPRR134 pKa = 4.07

Molecular weight: 12.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5820

0

5820

2114574

46

3235

363.3

42.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.597 ± 0.028

1.944 ± 0.013

5.194 ± 0.021

7.601 ± 0.041

5.966 ± 0.04

3.606 ± 0.035

1.71 ± 0.012

9.726 ± 0.035

9.811 ± 0.04

9.523 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.934 ± 0.014

8.671 ± 0.056

2.64 ± 0.024

2.48 ± 0.017

3.785 ± 0.023

7.825 ± 0.031

5.062 ± 0.03

4.813 ± 0.029

0.528 ± 0.006

4.584 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski