Deminuibacter soli

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Deminuibacter

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4790 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3E1NER1|A0A3E1NER1_9BACT Cytochrome oxidase subunit I OS=Deminuibacter soli OX=2291815 GN=DXN05_19780 PE=4 SV=1
MM1 pKa = 8.12DD2 pKa = 3.9NQKK5 pKa = 10.76KK6 pKa = 10.36GGLPGTPKK14 pKa = 10.7DD15 pKa = 3.13RR16 pKa = 11.84LTFNKK21 pKa = 8.99TDD23 pKa = 3.44QYY25 pKa = 11.13IDD27 pKa = 3.07AAAPIDD33 pKa = 4.13LSHH36 pKa = 6.76GCVAILVDD44 pKa = 3.7VAADD48 pKa = 3.73VVTDD52 pKa = 4.02AATDD56 pKa = 3.54AVTDD60 pKa = 3.87AVVDD64 pKa = 4.77GVADD68 pKa = 3.85SAADD72 pKa = 3.61AAADD76 pKa = 3.86TAADD80 pKa = 3.72AAADD84 pKa = 3.98TAADD88 pKa = 3.87TAADD92 pKa = 3.62AAADD96 pKa = 3.72AGADD100 pKa = 3.39SGAQGGISTACSKK113 pKa = 10.53RR114 pKa = 11.84LKK116 pKa = 9.59TLAIMLGGAIMSTVTTAVANAIYY139 pKa = 10.38NAIKK143 pKa = 10.54SAGSTPTTSADD154 pKa = 3.08YY155 pKa = 7.7WTALYY160 pKa = 11.2NSMITVYY167 pKa = 10.36PCNANNASTCPGNQRR182 pKa = 11.84DD183 pKa = 3.88EE184 pKa = 4.34QEE186 pKa = 4.42AMVLSLQQQLAQTASYY202 pKa = 9.43AQSAQTFEE210 pKa = 4.7EE211 pKa = 4.5SWSAASQTQLKK222 pKa = 10.39DD223 pKa = 3.33SLITVTDD230 pKa = 3.39TGGIPSMCQYY240 pKa = 9.78MEE242 pKa = 4.61NYY244 pKa = 8.38TNTGASGAALVIATINVFDD263 pKa = 3.74TVAAYY268 pKa = 7.95EE269 pKa = 4.27YY270 pKa = 10.35PDD272 pKa = 3.47LTNN275 pKa = 3.73

Molecular weight: 28.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3E1NJ30|A0A3E1NJ30_9BACT Uncharacterized protein OS=Deminuibacter soli OX=2291815 GN=DXN05_10350 PE=4 SV=1
MM1 pKa = 7.17TKK3 pKa = 9.84WLFTEE8 pKa = 4.15IDD10 pKa = 3.25TAIILRR16 pKa = 11.84VHH18 pKa = 6.61QIQSGMPGQQPINSVLVYY36 pKa = 9.46TCLLSGVQWFSVNTFEE52 pKa = 5.39TRR54 pKa = 11.84DD55 pKa = 3.29RR56 pKa = 11.84MEE58 pKa = 4.6GIRR61 pKa = 11.84RR62 pKa = 11.84EE63 pKa = 3.98RR64 pKa = 11.84LKK66 pKa = 10.81LVCFVRR72 pKa = 11.84RR73 pKa = 11.84NKK75 pKa = 9.93VAIVLRR81 pKa = 11.84KK82 pKa = 6.09MTSEE86 pKa = 3.48IRR88 pKa = 11.84ILFF91 pKa = 3.99

Molecular weight: 10.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4790

0

4790

1704224

26

7259

355.8

39.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.818 ± 0.042

0.911 ± 0.013

5.075 ± 0.022

4.946 ± 0.038

4.589 ± 0.029

7.026 ± 0.039

2.189 ± 0.02

6.269 ± 0.027

5.909 ± 0.035

9.53 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.316 ± 0.017

5.287 ± 0.037

4.128 ± 0.028

4.547 ± 0.026

4.222 ± 0.025

5.901 ± 0.032

6.194 ± 0.049

6.652 ± 0.035

1.316 ± 0.014

4.172 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski