Citreimonas salinaria

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Citreimonas

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4109 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3M1A7|A0A1H3M1A7_9RHOB Aminobenzoyl-glutamate utilization protein B OS=Citreimonas salinaria OX=321339 GN=SAMN05444340_11548 PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 10.28SILFATSVLVASAGMASAQYY22 pKa = 11.1VDD24 pKa = 3.6VAGSAEE30 pKa = 3.92VGIVGGEE37 pKa = 3.9RR38 pKa = 11.84YY39 pKa = 7.61GTPSSGGVDD48 pKa = 3.54QIFTDD53 pKa = 3.62IEE55 pKa = 4.66VVFTMTGQTDD65 pKa = 3.01NGLSYY70 pKa = 10.66GASVDD75 pKa = 4.12LDD77 pKa = 3.9EE78 pKa = 7.35GDD80 pKa = 4.98DD81 pKa = 4.2SFDD84 pKa = 3.58GTDD87 pKa = 4.16DD88 pKa = 5.83DD89 pKa = 4.52GATWFLVYY97 pKa = 10.58GDD99 pKa = 4.15YY100 pKa = 10.97RR101 pKa = 11.84LDD103 pKa = 3.7VGDD106 pKa = 3.7TDD108 pKa = 4.19GAFDD112 pKa = 3.72AAVAEE117 pKa = 4.37TSLVGTINDD126 pKa = 3.98TEE128 pKa = 4.08EE129 pKa = 3.93HH130 pKa = 6.22LGYY133 pKa = 10.33SGNSALDD140 pKa = 4.17GIYY143 pKa = 10.41DD144 pKa = 3.72GQIARR149 pKa = 11.84LSRR152 pKa = 11.84SAGSVAGHH160 pKa = 5.88VSVEE164 pKa = 3.87VDD166 pKa = 4.12DD167 pKa = 4.64MGEE170 pKa = 3.93SSPVYY175 pKa = 10.21GVGFTYY181 pKa = 10.43DD182 pKa = 3.05RR183 pKa = 11.84RR184 pKa = 11.84IAGVDD189 pKa = 3.16VRR191 pKa = 11.84VGVGHH196 pKa = 6.08QRR198 pKa = 11.84TVVDD202 pKa = 3.65ADD204 pKa = 4.54DD205 pKa = 4.01YY206 pKa = 11.97GFDD209 pKa = 4.63DD210 pKa = 5.01GLHH213 pKa = 5.14TVAGASVSTSHH224 pKa = 6.69EE225 pKa = 3.91NGLRR229 pKa = 11.84TVASYY234 pKa = 11.5VEE236 pKa = 4.05YY237 pKa = 10.93DD238 pKa = 3.23QANWSKK244 pKa = 9.48TMKK247 pKa = 10.21HH248 pKa = 5.16SAIGVGYY255 pKa = 8.36TRR257 pKa = 11.84DD258 pKa = 3.82ALSVAANYY266 pKa = 10.17GIYY269 pKa = 10.41NDD271 pKa = 3.91FDD273 pKa = 4.37GVDD276 pKa = 3.69GPTSRR281 pKa = 11.84GYY283 pKa = 11.4AFAVNYY289 pKa = 10.17DD290 pKa = 3.56LGGGLVAQAGFSEE303 pKa = 4.67SDD305 pKa = 3.39LKK307 pKa = 11.45VDD309 pKa = 3.93GFEE312 pKa = 4.89HH313 pKa = 7.04EE314 pKa = 4.37GDD316 pKa = 3.65NYY318 pKa = 11.12SLGVAMAFF326 pKa = 3.68

Molecular weight: 34.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H3KPV1|A0A1H3KPV1_9RHOB dCTP deaminase OS=Citreimonas salinaria OX=321339 GN=SAMN05444340_11037 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4109

0

4109

1253694

30

2143

305.1

33.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.073 ± 0.057

0.862 ± 0.012

6.299 ± 0.034

5.981 ± 0.037

3.559 ± 0.024

8.785 ± 0.039

2.108 ± 0.018

4.807 ± 0.029

2.583 ± 0.03

10.078 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.707 ± 0.017

2.227 ± 0.023

5.258 ± 0.025

2.991 ± 0.019

7.588 ± 0.04

4.864 ± 0.026

5.343 ± 0.024

7.395 ± 0.036

1.425 ± 0.017

2.066 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski