Pandoravirus neocaledonia

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses; Pandoravirus

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1081 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U7UB11|A0A2U7UB11_9VIRU Uncharacterized protein OS=Pandoravirus neocaledonia OX=2107708 GN=pneo_cds_34 PE=4 SV=1
MM1 pKa = 7.74SDD3 pKa = 3.08PRR5 pKa = 11.84LGYY8 pKa = 10.06AYY10 pKa = 10.31SYY12 pKa = 10.63GAEE15 pKa = 3.66PSGFVGAAPPSAAGAVWRR33 pKa = 11.84GTGAPRR39 pKa = 11.84TRR41 pKa = 11.84EE42 pKa = 3.92LGRR45 pKa = 11.84SNAAAPLAWNAQPPFGAALAQQQQQQHH72 pKa = 5.78TLRR75 pKa = 11.84QPPPAYY81 pKa = 10.16SGQSYY86 pKa = 10.23GGAVAAPYY94 pKa = 10.4ASSGYY99 pKa = 10.56SDD101 pKa = 5.4DD102 pKa = 4.24EE103 pKa = 4.74GSAGSDD109 pKa = 2.93ADD111 pKa = 4.26GAFSDD116 pKa = 5.57DD117 pKa = 4.32AASDD121 pKa = 3.97DD122 pKa = 4.3DD123 pKa = 5.34DD124 pKa = 4.35GVVYY128 pKa = 10.8SDD130 pKa = 5.58DD131 pKa = 3.76EE132 pKa = 5.09NGDD135 pKa = 3.3EE136 pKa = 4.43GARR139 pKa = 11.84GSWDD143 pKa = 3.11GGVYY147 pKa = 10.12GAAPAQSSWWW157 pKa = 3.51

Molecular weight: 15.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U7UD00|A0A2U7UD00_9VIRU Uncharacterized protein OS=Pandoravirus neocaledonia OX=2107708 GN=pneo_cds_603 PE=4 SV=1
MM1 pKa = 7.48GANDD5 pKa = 3.38SRR7 pKa = 11.84SAVTMHH13 pKa = 5.53VRR15 pKa = 11.84AATDD19 pKa = 3.29RR20 pKa = 11.84SICGKK25 pKa = 10.03GCSYY29 pKa = 10.85CHH31 pKa = 5.95NKK33 pKa = 10.43AYY35 pKa = 9.82IHH37 pKa = 6.06VVANDD42 pKa = 3.6GSGRR46 pKa = 11.84FLLPLRR52 pKa = 11.84EE53 pKa = 4.15RR54 pKa = 11.84LPTVPRR60 pKa = 11.84VVQRR64 pKa = 11.84APHH67 pKa = 6.58KK68 pKa = 10.58DD69 pKa = 3.16VSLWQVRR76 pKa = 11.84RR77 pKa = 11.84VRR79 pKa = 11.84HH80 pKa = 6.28ADD82 pKa = 3.11TAAATAQKK90 pKa = 10.29RR91 pKa = 11.84RR92 pKa = 11.84RR93 pKa = 11.84QHH95 pKa = 5.66HH96 pKa = 6.92AGPGHH101 pKa = 6.19CHH103 pKa = 6.12GAPRR107 pKa = 11.84WRR109 pKa = 11.84QVSRR113 pKa = 11.84DD114 pKa = 3.75EE115 pKa = 4.12QPAAVAPWPSSLGFASVLCDD135 pKa = 3.94GEE137 pKa = 4.55HH138 pKa = 7.15KK139 pKa = 10.5EE140 pKa = 4.14

Molecular weight: 15.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1081

0

1081

412939

51

2360

382.0

41.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.084 ± 0.094

2.611 ± 0.048

7.394 ± 0.081

3.934 ± 0.044

2.307 ± 0.032

7.899 ± 0.08

3.005 ± 0.039

3.203 ± 0.039

2.208 ± 0.051

7.89 ± 0.075

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.039 ± 0.026

2.221 ± 0.036

6.307 ± 0.073

2.688 ± 0.043

8.926 ± 0.066

6.168 ± 0.066

5.656 ± 0.06

7.32 ± 0.05

1.966 ± 0.04

2.171 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski