Providencia sneebia DSM 19967

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia; Providencia sneebia

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3113 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K8WEP6|K8WEP6_9GAMM Arginine transporter ATP-binding subunit OS=Providencia sneebia DSM 19967 OX=1141660 GN=artP PE=3 SV=1
MM1 pKa = 7.81KK2 pKa = 10.19IGLFYY7 pKa = 10.96GSSTCYY13 pKa = 10.19TEE15 pKa = 4.84IVAEE19 pKa = 4.56KK20 pKa = 10.32IRR22 pKa = 11.84DD23 pKa = 3.51ILGDD27 pKa = 3.76GFVTLHH33 pKa = 6.07NVNDD37 pKa = 4.25TPPEE41 pKa = 3.75MMEE44 pKa = 4.09QYY46 pKa = 10.94NILILGIPTWDD57 pKa = 3.26FGEE60 pKa = 4.27IQEE63 pKa = 4.57DD64 pKa = 3.8WLTIWDD70 pKa = 4.52ALPNLQLQDD79 pKa = 4.61KK80 pKa = 8.94IIAMYY85 pKa = 11.01GMGDD89 pKa = 3.51QIDD92 pKa = 3.87YY93 pKa = 11.36SEE95 pKa = 4.5WFLDD99 pKa = 3.63ALGMLYY105 pKa = 10.13HH106 pKa = 5.89QLKK109 pKa = 8.04PTGAKK114 pKa = 9.68FVGFWPLDD122 pKa = 3.54GYY124 pKa = 11.31EE125 pKa = 4.2FDD127 pKa = 3.97SPKK130 pKa = 10.56PLTEE134 pKa = 5.52DD135 pKa = 3.47GSQFVGLALDD145 pKa = 4.41DD146 pKa = 4.14VNQFEE151 pKa = 4.5QTDD154 pKa = 3.47EE155 pKa = 6.17RR156 pKa = 11.84IAQWCVQILQEE167 pKa = 4.83IEE169 pKa = 3.96EE170 pKa = 4.38LLL172 pKa = 4.04

Molecular weight: 19.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K8WLG1|K8WLG1_9GAMM tRNA modification GTPase MnmE OS=Providencia sneebia DSM 19967 OX=1141660 GN=mnmE PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSSKK47 pKa = 11.16

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3113

0

3113

951914

26

2847

305.8

34.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.111 ± 0.052

1.064 ± 0.015

5.219 ± 0.029

6.037 ± 0.047

4.104 ± 0.038

6.717 ± 0.045

2.163 ± 0.023

7.413 ± 0.046

5.531 ± 0.041

10.465 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.637 ± 0.02

4.723 ± 0.044

4.1 ± 0.026

4.581 ± 0.046

4.571 ± 0.038

6.408 ± 0.034

5.25 ± 0.03

6.417 ± 0.039

1.259 ± 0.017

3.22 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski