Terasakiispira papahanaumokuakeensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillales incertae sedis; Terasakiispira

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3403 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E2V732|A0A1E2V732_9GAMM LysR family transcriptional regulator OS=Terasakiispira papahanaumokuakeensis OX=197479 GN=BFW38_03900 PE=3 SV=1
MM1 pKa = 7.66AISASFEE8 pKa = 4.07EE9 pKa = 4.64KK10 pKa = 10.73VYY12 pKa = 11.06LLAYY16 pKa = 7.31TAYY19 pKa = 10.24GKK21 pKa = 10.24DD22 pKa = 3.5LTDD25 pKa = 3.37MQGDD29 pKa = 4.47FLTSYY34 pKa = 9.82GQNDD38 pKa = 3.85LHH40 pKa = 7.74KK41 pKa = 10.32VAQFLLDD48 pKa = 3.56SGYY51 pKa = 11.08LGTDD55 pKa = 3.23YY56 pKa = 11.39SGTTDD61 pKa = 3.27RR62 pKa = 11.84QFVSSLTEE70 pKa = 3.96SYY72 pKa = 11.9ANGLVSAEE80 pKa = 4.0RR81 pKa = 11.84QQVTKK86 pKa = 10.65QYY88 pKa = 8.07FTNEE92 pKa = 3.79LQQDD96 pKa = 4.19GVDD99 pKa = 3.59KK100 pKa = 11.26ADD102 pKa = 3.17IMVNMLEE109 pKa = 3.97AMLRR113 pKa = 11.84STDD116 pKa = 4.2SEE118 pKa = 4.24WSTAASNAYY127 pKa = 9.04TEE129 pKa = 4.62VLSNMNDD136 pKa = 3.18FSSFAFEE143 pKa = 4.19ATPSDD148 pKa = 4.01EE149 pKa = 4.29LTGVDD154 pKa = 4.56AFDD157 pKa = 3.99FTDD160 pKa = 3.11HH161 pKa = 7.16HH162 pKa = 7.55DD163 pKa = 3.87DD164 pKa = 3.63AVVYY168 pKa = 10.13SQAPVDD174 pKa = 3.66SHH176 pKa = 7.62DD177 pKa = 3.4ITLVGTADD185 pKa = 3.58VPALEE190 pKa = 4.46TDD192 pKa = 3.47SVLII196 pKa = 4.35

Molecular weight: 21.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E2VCV0|A0A1E2VCV0_9GAMM Probable chromosome-partitioning protein ParB OS=Terasakiispira papahanaumokuakeensis OX=197479 GN=BFW38_15860 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 8.96VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.19GRR39 pKa = 11.84HH40 pKa = 5.26RR41 pKa = 11.84LSAA44 pKa = 3.8

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3403

0

3403

1145210

39

5688

336.5

37.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.135 ± 0.05

0.961 ± 0.013

5.621 ± 0.039

5.798 ± 0.041

3.437 ± 0.026

7.369 ± 0.04

2.749 ± 0.024

5.172 ± 0.037

3.131 ± 0.033

11.414 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.693 ± 0.022

2.924 ± 0.033

4.826 ± 0.031

5.643 ± 0.057

6.023 ± 0.041

5.926 ± 0.038

5.29 ± 0.034

6.746 ± 0.037

1.567 ± 0.022

2.577 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski