Aliidiomarina minuta

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Aliidiomarina

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2751 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432W3H0|A0A432W3H0_9GAMM Uncharacterized protein OS=Aliidiomarina minuta OX=880057 GN=CWE09_12250 PE=4 SV=1
MM1 pKa = 7.9EE2 pKa = 5.15YY3 pKa = 8.87NTSEE7 pKa = 4.51LCDD10 pKa = 4.47LYY12 pKa = 11.24ADD14 pKa = 3.83SVDD17 pKa = 3.49VVEE20 pKa = 5.24PMFVNYY26 pKa = 10.17GGRR29 pKa = 11.84SSFGGQIVTIKK40 pKa = 10.26CHH42 pKa = 5.55EE43 pKa = 4.66DD44 pKa = 2.9KK45 pKa = 11.42GLIEE49 pKa = 4.79ATLQDD54 pKa = 3.51AGAGKK59 pKa = 10.45VLLVDD64 pKa = 4.01GGGSLRR70 pKa = 11.84RR71 pKa = 11.84ALIDD75 pKa = 3.21IAIAEE80 pKa = 4.24LAVEE84 pKa = 4.47NEE86 pKa = 3.9WEE88 pKa = 4.51GIICYY93 pKa = 10.48GCVRR97 pKa = 11.84DD98 pKa = 4.3VDD100 pKa = 4.03ALEE103 pKa = 5.17DD104 pKa = 4.02LDD106 pKa = 5.99LGIQAVASLPVGAPSASTGEE126 pKa = 3.53VDD128 pKa = 3.59IPVNFGGVTFLPEE141 pKa = 3.46DD142 pKa = 4.47HH143 pKa = 7.26IYY145 pKa = 11.47ADD147 pKa = 3.57ATGVILSPEE156 pKa = 4.24PLDD159 pKa = 3.82IDD161 pKa = 3.71

Molecular weight: 16.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432WA08|A0A432WA08_9GAMM Uncharacterized protein OS=Aliidiomarina minuta OX=880057 GN=CWE09_09025 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.36RR14 pKa = 11.84SHH16 pKa = 6.15GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.94GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2751

0

2751

902465

37

2816

328.0

36.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.354 ± 0.046

0.852 ± 0.015

5.711 ± 0.035

6.652 ± 0.049

3.916 ± 0.033

6.995 ± 0.042

2.318 ± 0.023

5.645 ± 0.038

3.879 ± 0.053

10.776 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.023

3.672 ± 0.03

4.146 ± 0.024

5.359 ± 0.047

5.756 ± 0.036

6.321 ± 0.032

4.937 ± 0.028

6.86 ± 0.042

1.36 ± 0.021

2.939 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski