Streptococcus phage YMC-2011

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F8HGP3|F8HGP3_9CAUD Uncharacterized protein OS=Streptococcus phage YMC-2011 OX=1051631 GN=Ssal_phage00009 PE=4 SV=1
MM1 pKa = 7.31ATDD4 pKa = 3.32NDD6 pKa = 3.98IIQFAEE12 pKa = 3.9NLADD16 pKa = 4.08AGVGTDD22 pKa = 5.53ADD24 pKa = 4.57GAWGTQCVDD33 pKa = 3.86LPNSISINFFGRR45 pKa = 11.84ALWGNAIDD53 pKa = 4.82LLNSAAEE60 pKa = 3.8AGYY63 pKa = 9.78EE64 pKa = 3.97VEE66 pKa = 4.4YY67 pKa = 11.0NQVGNLDD74 pKa = 3.35SRR76 pKa = 11.84PRR78 pKa = 11.84RR79 pKa = 11.84GAVFVMDD86 pKa = 3.68TTYY89 pKa = 10.83IAGHH93 pKa = 6.93PYY95 pKa = 10.14GHH97 pKa = 6.99TGLVIEE103 pKa = 5.45DD104 pKa = 3.4SDD106 pKa = 4.88GYY108 pKa = 8.63TMRR111 pKa = 11.84TIEE114 pKa = 4.63QNIDD118 pKa = 2.96GNADD122 pKa = 3.3SLYY125 pKa = 9.74VGGPARR131 pKa = 11.84YY132 pKa = 7.46NTRR135 pKa = 11.84NFDD138 pKa = 4.25GIVGWFYY145 pKa = 11.19FPTDD149 pKa = 3.63NQSQAPAPTLTPFDD163 pKa = 4.52GIITINEE170 pKa = 3.86EE171 pKa = 3.83TGTFTVEE178 pKa = 3.56VSALNVRR185 pKa = 11.84AGAGLGAEE193 pKa = 4.03IVAVYY198 pKa = 10.09GAGEE202 pKa = 4.27TINYY206 pKa = 9.23DD207 pKa = 3.24GWCDD211 pKa = 3.03VDD213 pKa = 4.36GYY215 pKa = 10.88IWISYY220 pKa = 9.71ISWSGNRR227 pKa = 11.84RR228 pKa = 11.84YY229 pKa = 10.28VAVGQSEE236 pKa = 3.98NGRR239 pKa = 11.84RR240 pKa = 11.84VTSFGSFAA248 pKa = 4.1

Molecular weight: 26.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F8HGQ2|F8HGQ2_9CAUD Phage protein OS=Streptococcus phage YMC-2011 OX=1051631 GN=Ssal_phage00020 PE=4 SV=1
MM1 pKa = 7.73RR2 pKa = 11.84QRR4 pKa = 11.84CQKK7 pKa = 10.05SKK9 pKa = 10.75RR10 pKa = 11.84YY11 pKa = 9.93DD12 pKa = 3.0ISFLRR17 pKa = 11.84KK18 pKa = 7.97TKK20 pKa = 9.86KK21 pKa = 9.96QKK23 pKa = 9.93NACSQNEE30 pKa = 4.05QLPKK34 pKa = 10.86GVGG37 pKa = 3.1

Molecular weight: 4.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

12401

37

952

225.5

25.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.693 ± 0.534

0.702 ± 0.162

6.379 ± 0.25

7.04 ± 0.492

4.225 ± 0.183

6.951 ± 0.494

1.387 ± 0.137

6.298 ± 0.223

8.378 ± 0.406

7.564 ± 0.285

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.33 ± 0.198

5.79 ± 0.254

3.306 ± 0.322

4.193 ± 0.353

4.225 ± 0.287

6.072 ± 0.298

6.604 ± 0.307

6.572 ± 0.242

1.355 ± 0.123

3.935 ± 0.219
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski