Atlantibacter hermannii NBRC 105704

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Atlantibacter; Atlantibacter hermannii

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4159 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H5V0I1|H5V0I1_ATLHE DNA mismatch repair protein MutS OS=Atlantibacter hermannii NBRC 105704 OX=1115512 GN=mutS PE=3 SV=1
MM1 pKa = 7.62NMGLFYY7 pKa = 10.89GSSTCYY13 pKa = 10.49TEE15 pKa = 3.84MAAEE19 pKa = 5.12KK20 pKa = 10.0IRR22 pKa = 11.84DD23 pKa = 3.65IIGPEE28 pKa = 4.02LVTLHH33 pKa = 6.14NLKK36 pKa = 10.64DD37 pKa = 3.68DD38 pKa = 4.36APALMEE44 pKa = 4.2QYY46 pKa = 10.98DD47 pKa = 4.12VLILGIPTWDD57 pKa = 3.26FGEE60 pKa = 4.22IQEE63 pKa = 4.35DD64 pKa = 3.97WEE66 pKa = 4.89AIWDD70 pKa = 3.89QLDD73 pKa = 3.66TLDD76 pKa = 4.17LAGKK80 pKa = 9.72IVALYY85 pKa = 11.07GMGDD89 pKa = 3.29QLGYY93 pKa = 11.02GEE95 pKa = 4.87WFLDD99 pKa = 3.74ALGMLHH105 pKa = 7.44DD106 pKa = 4.34KK107 pKa = 11.0LMPKK111 pKa = 9.82GVKK114 pKa = 9.57FVGYY118 pKa = 9.0WPTEE122 pKa = 4.03GYY124 pKa = 10.61EE125 pKa = 4.19FTSPKK130 pKa = 10.02PVIADD135 pKa = 3.41GQLFVGLALDD145 pKa = 3.64EE146 pKa = 4.38TNQYY150 pKa = 10.89DD151 pKa = 4.3LSDD154 pKa = 3.47EE155 pKa = 5.91RR156 pKa = 11.84IQQWCEE162 pKa = 3.62QILGEE167 pKa = 4.17MAEE170 pKa = 4.4HH171 pKa = 7.09FSS173 pKa = 3.73

Molecular weight: 19.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H5V3R1|H5V3R1_ATLHE AAA_15 domain-containing protein OS=Atlantibacter hermannii NBRC 105704 OX=1115512 GN=EH105704_07_01870 PE=4 SV=1
MM1 pKa = 7.05LTVPALCWLCGMPLALSHH19 pKa = 6.84WGLCSRR25 pKa = 11.84CVAALPAPPPACPVCGLPAVVTTMPCGRR53 pKa = 11.84CLHH56 pKa = 6.57KK57 pKa = 10.73PPAWEE62 pKa = 3.71RR63 pKa = 11.84LLYY66 pKa = 8.74VTDD69 pKa = 3.59YY70 pKa = 10.23CQPLSALVQALKK82 pKa = 9.87FHH84 pKa = 6.71RR85 pKa = 11.84QTALAKK91 pKa = 9.63PLARR95 pKa = 11.84LMLLRR100 pKa = 11.84ARR102 pKa = 11.84EE103 pKa = 4.11ALRR106 pKa = 11.84EE107 pKa = 3.96QAFPRR112 pKa = 11.84PDD114 pKa = 3.38LVIGVPLHH122 pKa = 7.01RR123 pKa = 11.84RR124 pKa = 11.84RR125 pKa = 11.84AWHH128 pKa = 6.6RR129 pKa = 11.84GFNQSALLAKK139 pKa = 10.14PLARR143 pKa = 11.84WLGCRR148 pKa = 11.84YY149 pKa = 10.0DD150 pKa = 4.13DD151 pKa = 3.83RR152 pKa = 11.84VLRR155 pKa = 11.84RR156 pKa = 11.84IRR158 pKa = 11.84STPVQHH164 pKa = 6.68HH165 pKa = 6.3LSARR169 pKa = 11.84LRR171 pKa = 11.84KK172 pKa = 9.53KK173 pKa = 10.13NLRR176 pKa = 11.84AAFRR180 pKa = 11.84LEE182 pKa = 3.94LPVRR186 pKa = 11.84DD187 pKa = 3.64LHH189 pKa = 8.32IVIVDD194 pKa = 3.75DD195 pKa = 4.22VVTTGSTVGEE205 pKa = 4.18MAKK208 pKa = 10.44LLHH211 pKa = 6.17RR212 pKa = 11.84HH213 pKa = 5.48GAATVQVWCLCRR225 pKa = 11.84TLL227 pKa = 4.39

Molecular weight: 25.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4159

0

4159

1323175

29

4081

318.1

35.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.027 ± 0.046

1.083 ± 0.014

5.273 ± 0.031

5.602 ± 0.034

3.834 ± 0.03

7.505 ± 0.044

2.29 ± 0.02

5.703 ± 0.031

4.088 ± 0.032

10.773 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.765 ± 0.02

3.733 ± 0.029

4.542 ± 0.029

4.455 ± 0.033

5.751 ± 0.033

5.791 ± 0.029

5.404 ± 0.033

7.149 ± 0.033

1.526 ± 0.018

2.705 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski