Dinothrombium tinctorium

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Chelicerata; Arachnida; Acari; Acariformes; Trombidiformes; Prostigmata; Anystina; Parasitengona; Trombidioidea; Trombidiidae; Dinothrombium

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13518 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S3P0X2|A0A3S3P0X2_9ACAR Protein lin-9-like protein OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_00973 PE=3 SV=1
MM1 pKa = 7.35ATMDD5 pKa = 4.44SSGGDD10 pKa = 3.12NDD12 pKa = 3.43VSPFLDD18 pKa = 4.41EE19 pKa = 4.23ILLNKK24 pKa = 10.13SVTIRR29 pKa = 11.84PDD31 pKa = 3.3DD32 pKa = 3.93VNATNDD38 pKa = 3.7YY39 pKa = 10.51NWIFLFLIAFIFIGIVGNVLVCLAICLEE67 pKa = 4.0RR68 pKa = 11.84RR69 pKa = 11.84LQNATNYY76 pKa = 9.84FLLSLAVADD85 pKa = 4.48LLVCVVVMPILILDD99 pKa = 3.98DD100 pKa = 5.47FYY102 pKa = 11.93ACKK105 pKa = 10.42

Molecular weight: 11.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S3NPG7|A0A3S3NPG7_9ACAR Tetraspanin OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_05050 PE=3 SV=1
II1 pKa = 7.0SARR4 pKa = 11.84TRR6 pKa = 11.84ISARR10 pKa = 11.84TSISTKK16 pKa = 8.45TRR18 pKa = 11.84ISSIARR24 pKa = 11.84ISTRR28 pKa = 11.84TRR30 pKa = 11.84IFYY33 pKa = 7.74RR34 pKa = 11.84TRR36 pKa = 11.84ISSRR40 pKa = 11.84TRR42 pKa = 11.84ISARR46 pKa = 11.84TRR48 pKa = 11.84ISARR52 pKa = 11.84TNISTKK58 pKa = 8.57TRR60 pKa = 11.84ISSIARR66 pKa = 11.84ISTRR70 pKa = 11.84TRR72 pKa = 11.84IFYY75 pKa = 7.75RR76 pKa = 11.84TRR78 pKa = 11.84ILYY81 pKa = 9.97RR82 pKa = 11.84SRR84 pKa = 11.84SSSRR88 pKa = 11.84NRR90 pKa = 11.84ISTSSRR96 pKa = 11.84ISIRR100 pKa = 11.84FRR102 pKa = 11.84IFYY105 pKa = 9.89RR106 pKa = 11.84SPNSIVII113 pKa = 3.83

Molecular weight: 13.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13518

0

13518

5891483

8

5318

435.8

49.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.755 ± 0.017

2.15 ± 0.016

5.223 ± 0.014

6.791 ± 0.024

4.776 ± 0.019

4.877 ± 0.021

2.299 ± 0.01

6.7 ± 0.019

7.164 ± 0.021

9.269 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.079 ± 0.007

5.796 ± 0.017

4.285 ± 0.022

3.839 ± 0.016

4.87 ± 0.015

8.394 ± 0.027

5.312 ± 0.015

5.944 ± 0.017

1.094 ± 0.006

3.367 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski