Paracoccus seriniphilus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3981 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A239PMU0|A0A239PMU0_9RHOB Uncharacterized protein OS=Paracoccus seriniphilus OX=184748 GN=SAMN05444959_102128 PE=4 SV=1
MM1 pKa = 7.46KK2 pKa = 10.38LVIAAVTSSLIAGSAYY18 pKa = 10.31AGGYY22 pKa = 4.76TAPVVEE28 pKa = 5.3PSPEE32 pKa = 5.01PITVSPVVNDD42 pKa = 2.97VSNWTGFYY50 pKa = 10.64AGAQYY55 pKa = 11.04GQGSADD61 pKa = 3.65FNNGLGDD68 pKa = 3.81SDD70 pKa = 3.74ADD72 pKa = 3.55AYY74 pKa = 10.49GVHH77 pKa = 6.87AGYY80 pKa = 10.82NYY82 pKa = 10.92DD83 pKa = 3.45LGNWVVGGEE92 pKa = 3.98LDD94 pKa = 3.99YY95 pKa = 11.92NKK97 pKa = 9.96VDD99 pKa = 5.77ADD101 pKa = 4.08DD102 pKa = 5.95LDD104 pKa = 5.07DD105 pKa = 5.08KK106 pKa = 11.99GDD108 pKa = 3.69MTRR111 pKa = 11.84LRR113 pKa = 11.84ARR115 pKa = 11.84AGYY118 pKa = 10.98DD119 pKa = 2.78MGKK122 pKa = 10.16FMPYY126 pKa = 8.09VTLGAAHH133 pKa = 7.87LSQDD137 pKa = 3.44IPGGDD142 pKa = 3.15ISEE145 pKa = 4.32TDD147 pKa = 3.14VTYY150 pKa = 10.68GIGAEE155 pKa = 4.17YY156 pKa = 10.52KK157 pKa = 8.79VTEE160 pKa = 4.2QFTVGAEE167 pKa = 3.87YY168 pKa = 9.89TKK170 pKa = 10.73QDD172 pKa = 3.51FSDD175 pKa = 3.71VADD178 pKa = 3.66VDD180 pKa = 4.92GLDD183 pKa = 4.57LDD185 pKa = 3.88TDD187 pKa = 4.29MVQMRR192 pKa = 11.84ASFRR196 pKa = 11.84FF197 pKa = 3.41

Molecular weight: 20.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A239PLZ7|A0A239PLZ7_9RHOB Xaa-Pro aminopeptidase OS=Paracoccus seriniphilus OX=184748 GN=SAMN05444959_101368 PE=3 SV=1
MM1 pKa = 7.06GQIINMILRR10 pKa = 11.84QILRR14 pKa = 11.84QAMQWGIRR22 pKa = 11.84KK23 pKa = 8.73GVNRR27 pKa = 11.84MGQNPGKK34 pKa = 8.3TGSRR38 pKa = 11.84ASPQTARR45 pKa = 11.84NQQQTVKK52 pKa = 10.58RR53 pKa = 11.84IRR55 pKa = 11.84QAMRR59 pKa = 11.84VIRR62 pKa = 11.84RR63 pKa = 11.84IGRR66 pKa = 3.42

Molecular weight: 7.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3981

0

3981

1275686

26

2132

320.4

34.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.13 ± 0.049

0.925 ± 0.014

6.05 ± 0.034

5.72 ± 0.033

3.624 ± 0.026

8.639 ± 0.037

2.122 ± 0.018

5.396 ± 0.025

2.866 ± 0.027

10.213 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.91 ± 0.018

2.59 ± 0.018

5.165 ± 0.026

3.47 ± 0.022

7.076 ± 0.037

5.398 ± 0.025

5.168 ± 0.028

6.998 ± 0.032

1.419 ± 0.017

2.121 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski