Campylobacter virus NCTC12673

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Eucampyvirinae; Fletchervirus

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 166 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F4YAI3|F4YAI3_9CAUD Ribonucleoside-diphosphate reductase OS=Campylobacter virus NCTC12673 OX=934027 PE=3 SV=1
MM1 pKa = 7.24IQFNLLCSYY10 pKa = 10.7VIFSSITCVIFNDD23 pKa = 3.18IDD25 pKa = 3.43NRR27 pKa = 11.84EE28 pKa = 4.12YY29 pKa = 11.15EE30 pKa = 4.04NMIVEE35 pKa = 5.41FISIFIFFIFFVYY48 pKa = 10.31QLIIYY53 pKa = 10.3RR54 pKa = 11.84NFNRR58 pKa = 11.84DD59 pKa = 3.09KK60 pKa = 11.72VEE62 pKa = 5.33DD63 pKa = 3.92NLCC66 pKa = 3.85

Molecular weight: 8.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F4YA75|F4YA75_9CAUD Gp62 clamp loader subunit OS=Campylobacter virus NCTC12673 OX=934027 PE=4 SV=1
MM1 pKa = 7.31KK2 pKa = 9.96RR3 pKa = 11.84DD4 pKa = 3.31GSIIKK9 pKa = 10.08SFKK12 pKa = 10.65RR13 pKa = 11.84EE14 pKa = 3.62INLQTRR20 pKa = 11.84FIKK23 pKa = 10.85NKK25 pKa = 8.46TKK27 pKa = 8.49YY28 pKa = 7.92TRR30 pKa = 11.84KK31 pKa = 9.49EE32 pKa = 3.71KK33 pKa = 10.38HH34 pKa = 6.19KK35 pKa = 10.51KK36 pKa = 8.96GAINGFNN43 pKa = 3.3

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

166

0

166

40602

35

1365

244.6

28.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.256 ± 0.174

1.877 ± 0.15

6.28 ± 0.191

6.81 ± 0.192

5.027 ± 0.147

4.983 ± 0.15

1.566 ± 0.092

9.359 ± 0.175

10.187 ± 0.221

8.741 ± 0.144

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.118 ± 0.08

8.63 ± 0.175

2.579 ± 0.091

2.628 ± 0.09

2.68 ± 0.094

6.879 ± 0.161

5.167 ± 0.196

5.12 ± 0.142

0.825 ± 0.048

5.288 ± 0.128
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski