Rhodanobacter sp. FW510-R10

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Rhodanobacter; unclassified Rhodanobacter

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3386 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A154R534|A0A154R534_9GAMM Tol-Pal system protein TolR OS=Rhodanobacter sp. FW510-R10 OX=1524462 GN=tolR PE=3 SV=1
MM1 pKa = 7.04SQSSTEE7 pKa = 3.75AAALRR12 pKa = 11.84KK13 pKa = 8.44WMCVVCGYY21 pKa = 10.35IYY23 pKa = 10.72DD24 pKa = 4.06EE25 pKa = 4.46AAGVPDD31 pKa = 3.78EE32 pKa = 5.36GIPAGTRR39 pKa = 11.84WADD42 pKa = 3.79VPDD45 pKa = 3.6TWTCPDD51 pKa = 3.9CGATKK56 pKa = 10.7ADD58 pKa = 3.71FEE60 pKa = 4.72MIEE63 pKa = 3.88IDD65 pKa = 3.43

Molecular weight: 7.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A154R1P6|A0A154R1P6_9GAMM DNA repair photolyase OS=Rhodanobacter sp. FW510-R10 OX=1524462 GN=RhoFW510R10_15330 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.06LKK11 pKa = 10.38RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATADD26 pKa = 3.35GRR28 pKa = 11.84KK29 pKa = 9.36VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.75GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LIPP44 pKa = 4.02

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3386

0

3386

1116988

41

2878

329.9

35.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.141 ± 0.062

0.865 ± 0.014

5.678 ± 0.033

5.053 ± 0.038

3.348 ± 0.026

8.586 ± 0.044

2.507 ± 0.019

4.136 ± 0.027

2.885 ± 0.031

11.13 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.201 ± 0.02

2.523 ± 0.035

5.357 ± 0.03

3.838 ± 0.025

7.503 ± 0.052

5.054 ± 0.037

4.812 ± 0.038

7.382 ± 0.036

1.543 ± 0.019

2.458 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski