Squirrelpox virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Sciuripoxvirus

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 141 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q1HTQ8|Q1HTQ8_9POXV C5R OS=Squirrelpox virus OX=240426 GN=C5R PE=4 SV=1
MM1 pKa = 7.62GFLCALFRR9 pKa = 11.84RR10 pKa = 11.84CLRR13 pKa = 11.84PSVPQEE19 pKa = 3.86SRR21 pKa = 11.84GDD23 pKa = 3.8PIVVVKK29 pKa = 10.43AAAAPLMRR37 pKa = 11.84PASEE41 pKa = 4.02EE42 pKa = 4.07DD43 pKa = 3.48EE44 pKa = 4.6SVLEE48 pKa = 4.3IAQSPASEE56 pKa = 4.14HH57 pKa = 5.72TFVISMVEE65 pKa = 3.88SRR67 pKa = 11.84GVMSDD72 pKa = 3.6TEE74 pKa = 4.4LEE76 pKa = 4.26SVDD79 pKa = 5.05LNEE82 pKa = 5.11CGEE85 pKa = 4.13DD86 pKa = 3.49RR87 pKa = 11.84YY88 pKa = 11.48GDD90 pKa = 3.47ACLDD94 pKa = 3.26EE95 pKa = 6.35DD96 pKa = 5.35YY97 pKa = 11.37YY98 pKa = 11.48DD99 pKa = 4.59EE100 pKa = 4.7PTLDD104 pKa = 3.89SEE106 pKa = 4.67DD107 pKa = 4.04EE108 pKa = 4.25RR109 pKa = 11.84VQSYY113 pKa = 10.9VDD115 pKa = 3.29ACVSIMRR122 pKa = 11.84EE123 pKa = 3.55KK124 pKa = 10.92CMASAAVADD133 pKa = 4.3GVNCYY138 pKa = 10.21RR139 pKa = 11.84PNSPSNLSSASSNSWKK155 pKa = 10.6FYY157 pKa = 8.65DD158 pKa = 3.9TRR160 pKa = 11.84CLEE163 pKa = 4.08SRR165 pKa = 11.84VV166 pKa = 3.57

Molecular weight: 18.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1HTU4|Q1HTU4_9POXV Hypothetical pox protein OS=Squirrelpox virus OX=240426 GN=I6L PE=4 SV=1
MM1 pKa = 7.31NGCFSSLSEE10 pKa = 4.2SRR12 pKa = 11.84LVTWVLRR19 pKa = 11.84VTGQQRR25 pKa = 11.84RR26 pKa = 11.84LRR28 pKa = 11.84RR29 pKa = 11.84AKK31 pKa = 10.11RR32 pKa = 11.84RR33 pKa = 11.84SRR35 pKa = 11.84WIVGLDD41 pKa = 3.44LEE43 pKa = 4.71GGKK46 pKa = 9.75VAVMDD51 pKa = 4.17TYY53 pKa = 10.43MEE55 pKa = 4.42RR56 pKa = 11.84FWPDD60 pKa = 3.88GINLTLPRR68 pKa = 11.84EE69 pKa = 4.2DD70 pKa = 4.57HH71 pKa = 6.38PTPLPRR77 pKa = 11.84KK78 pKa = 8.97KK79 pKa = 10.18KK80 pKa = 10.53LKK82 pKa = 10.68VKK84 pKa = 10.68VKK86 pKa = 10.52LL87 pKa = 3.68

Molecular weight: 10.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

141

0

141

46641

53

2060

330.8

36.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.472 ± 0.432

2.035 ± 0.108

6.141 ± 0.113

6.945 ± 0.508

4.003 ± 0.259

5.903 ± 0.406

2.125 ± 0.108

4.149 ± 0.261

4.014 ± 0.327

9.23 ± 0.253

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.556 ± 0.1

3.433 ± 0.201

4.794 ± 0.326

2.513 ± 0.186

8.244 ± 0.255

6.846 ± 0.251

5.412 ± 0.15

8.364 ± 0.258

0.718 ± 0.059

3.107 ± 0.165
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski