Vibrio phage YC

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; Campanilevirus; Vibrio virus YC

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 195 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A384ZS74|A0A384ZS74_9CAUD Uncharacterized protein OS=Vibrio phage YC OX=2267403 PE=4 SV=1
MM1 pKa = 6.42TTFRR5 pKa = 11.84NINISEE11 pKa = 4.29HH12 pKa = 6.78AGVDD16 pKa = 3.82HH17 pKa = 7.49IIVDD21 pKa = 4.23LNGDD25 pKa = 4.02LGYY28 pKa = 10.23IEE30 pKa = 5.79AYY32 pKa = 10.59NEE34 pKa = 3.71LLEE37 pKa = 4.77WIGGAWLVIDD47 pKa = 4.64CQTEE51 pKa = 4.19AEE53 pKa = 4.68DD54 pKa = 5.08SLEE57 pKa = 3.81QLLDD61 pKa = 3.56SFQQCDD67 pKa = 3.7EE68 pKa = 4.71IIDD71 pKa = 3.79YY72 pKa = 10.95DD73 pKa = 4.48KK74 pKa = 11.57EE75 pKa = 4.22EE76 pKa = 4.56PEE78 pKa = 4.35CGYY81 pKa = 8.89TRR83 pKa = 11.84YY84 pKa = 10.27LVTIAEE90 pKa = 4.31

Molecular weight: 10.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A384ZRZ7|A0A384ZRZ7_9CAUD Uncharacterized protein OS=Vibrio phage YC OX=2267403 PE=4 SV=1
MM1 pKa = 7.42EE2 pKa = 5.58MINVGRR8 pKa = 11.84HH9 pKa = 5.36RR10 pKa = 11.84DD11 pKa = 3.82DD12 pKa = 4.64LGEE15 pKa = 4.27DD16 pKa = 3.16AWRR19 pKa = 11.84VTCGGLVPVNTKK31 pKa = 10.29RR32 pKa = 11.84AVNHH36 pKa = 3.95QTIWGQIRR44 pKa = 11.84NVSYY48 pKa = 10.87RR49 pKa = 11.84NVVVWITLLTPNGEE63 pKa = 3.9YY64 pKa = 10.68DD65 pKa = 3.51VAIDD69 pKa = 3.5LRR71 pKa = 11.84KK72 pKa = 10.02VKK74 pKa = 10.2KK75 pKa = 10.06QRR77 pKa = 11.84LKK79 pKa = 10.48HH80 pKa = 5.91LRR82 pKa = 11.84AQGISTRR89 pKa = 11.84PCGYY93 pKa = 8.3TRR95 pKa = 11.84YY96 pKa = 10.2SYY98 pKa = 10.39WEE100 pKa = 4.03EE101 pKa = 4.26GGGGLDD107 pKa = 2.89TGAAHH112 pKa = 6.37SHH114 pKa = 4.59TMCRR118 pKa = 11.84KK119 pKa = 6.91TFRR122 pKa = 11.84SMSTPARR129 pKa = 11.84LFRR132 pKa = 11.84WLNPFMWYY140 pKa = 10.33

Molecular weight: 16.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

195

0

195

46541

46

1593

238.7

26.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.411 ± 0.146

1.126 ± 0.067

6.719 ± 0.143

7.176 ± 0.206

3.657 ± 0.101

6.835 ± 0.162

2.25 ± 0.103

5.853 ± 0.114

6.04 ± 0.25

8.045 ± 0.157

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.055 ± 0.107

4.895 ± 0.144

3.416 ± 0.111

3.431 ± 0.099

5.125 ± 0.13

6.323 ± 0.174

6.238 ± 0.21

7.387 ± 0.152

1.317 ± 0.065

3.702 ± 0.121
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski