Paenibacillus ginsengarvi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6998 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3B0AYY2|A0A3B0AYY2_9BACL Uncharacterized protein OS=Paenibacillus ginsengarvi OX=400777 GN=D7M11_32540 PE=4 SV=1
MM1 pKa = 7.56SEE3 pKa = 3.79APIYY7 pKa = 10.79FEE9 pKa = 5.63FSDD12 pKa = 3.65SSAAVMALDD21 pKa = 3.72TLSEE25 pKa = 4.3LGYY28 pKa = 9.86HH29 pKa = 6.16AHH31 pKa = 6.06ATEE34 pKa = 4.69LDD36 pKa = 3.86GKK38 pKa = 9.84PGVQVYY44 pKa = 10.1IDD46 pKa = 4.19KK47 pKa = 11.19NDD49 pKa = 3.42LTSALEE55 pKa = 3.76IAQASGGMLLSTEE68 pKa = 4.11RR69 pKa = 11.84AAADD73 pKa = 3.38ADD75 pKa = 4.3SYY77 pKa = 11.51KK78 pKa = 10.55LAYY81 pKa = 9.62EE82 pKa = 4.41LDD84 pKa = 3.93SVPIPAHH91 pKa = 6.09LVNEE95 pKa = 4.55DD96 pKa = 2.7WSEE99 pKa = 4.58SYY101 pKa = 10.85FSGDD105 pKa = 2.87GAATSEE111 pKa = 4.18AFDD114 pKa = 4.54PSGDD118 pKa = 4.0DD119 pKa = 3.37YY120 pKa = 12.09SHH122 pKa = 7.13FSARR126 pKa = 3.65

Molecular weight: 13.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3B0CMP3|A0A3B0CMP3_9BACL Carbohydrate ABC transporter permease OS=Paenibacillus ginsengarvi OX=400777 GN=D7M11_05570 PE=3 SV=1
MM1 pKa = 7.61GPTFKK6 pKa = 10.87PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.49GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.27NGRR28 pKa = 11.84KK29 pKa = 8.13VLKK32 pKa = 10.34ARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 9.9GRR39 pKa = 11.84KK40 pKa = 8.85VISAA44 pKa = 4.05

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6998

0

6998

2380545

25

3439

340.2

37.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.921 ± 0.035

0.84 ± 0.01

5.28 ± 0.021

6.498 ± 0.03

4.071 ± 0.019

7.875 ± 0.036

2.06 ± 0.015

5.979 ± 0.026

5.061 ± 0.031

9.801 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.692 ± 0.015

3.53 ± 0.023

4.412 ± 0.018

3.571 ± 0.016

5.748 ± 0.032

6.198 ± 0.021

5.485 ± 0.025

7.066 ± 0.024

1.333 ± 0.013

3.581 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski