Cricetid gammaherpesvirus 2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 82 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E9M5L4|E9M5L4_9GAMA Uncharacterized protein OS=Cricetid gammaherpesvirus 2 OX=1605972 GN=RHVP-L.31 PE=3 SV=1
MM1 pKa = 7.59SGPEE5 pKa = 3.72CSEE8 pKa = 4.05KK9 pKa = 10.64KK10 pKa = 10.33KK11 pKa = 9.6EE12 pKa = 4.26TISDD16 pKa = 3.58NDD18 pKa = 3.36MEE20 pKa = 4.4EE21 pKa = 4.19CMKK24 pKa = 10.43FFTMPLPQMLHH35 pKa = 7.33AINQSIADD43 pKa = 3.76FEE45 pKa = 4.84IVCSASQQLEE55 pKa = 4.29RR56 pKa = 11.84ACLLFDD62 pKa = 4.14FVGAEE67 pKa = 4.22CVKK70 pKa = 10.57DD71 pKa = 3.6VGMEE75 pKa = 3.84THH77 pKa = 7.17AEE79 pKa = 3.86

Molecular weight: 8.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E9M5K4|E9M5K4_9GAMA Thymidine kinase OS=Cricetid gammaherpesvirus 2 OX=1605972 GN=RHVP-L.21 PE=3 SV=1
MM1 pKa = 7.77AALHH5 pKa = 6.38KK6 pKa = 10.48NWAKK10 pKa = 8.73QTLAQLPPKK19 pKa = 9.88RR20 pKa = 11.84KK21 pKa = 9.28AVGKK25 pKa = 9.56RR26 pKa = 11.84AHH28 pKa = 6.22LRR30 pKa = 11.84CYY32 pKa = 9.84IQLLRR37 pKa = 11.84EE38 pKa = 4.28PTLHH42 pKa = 7.46ALLDD46 pKa = 3.7QLKK49 pKa = 10.0ISHH52 pKa = 7.1TDD54 pKa = 2.88GCHH57 pKa = 5.9QLFKK61 pKa = 11.0LYY63 pKa = 10.71FEE65 pKa = 4.53VRR67 pKa = 11.84LGHH70 pKa = 6.31RR71 pKa = 11.84VADD74 pKa = 4.76AIILTGNDD82 pKa = 4.22SLCHH86 pKa = 6.12CYY88 pKa = 10.0ILEE91 pKa = 4.49FKK93 pKa = 9.79TCASPKK99 pKa = 9.98FDD101 pKa = 3.75INCQIRR107 pKa = 11.84AAQHH111 pKa = 6.88AEE113 pKa = 4.0GCSQLRR119 pKa = 11.84DD120 pKa = 3.86MLSHH124 pKa = 6.76LRR126 pKa = 11.84WHH128 pKa = 6.33VPAGPEE134 pKa = 3.89SCSISCHH141 pKa = 6.43LVFKK145 pKa = 9.38SQRR148 pKa = 11.84GLKK151 pKa = 8.35TLYY154 pKa = 10.44SKK156 pKa = 11.13SLFGASASIPASRR169 pKa = 11.84SALHH173 pKa = 6.12VLLSSLEE180 pKa = 3.79DD181 pKa = 2.98RR182 pKa = 11.84AFKK185 pKa = 9.76NTLLRR190 pKa = 11.84HH191 pKa = 4.88VARR194 pKa = 11.84AKK196 pKa = 10.39HH197 pKa = 5.84DD198 pKa = 3.61RR199 pKa = 11.84CNLLGPKK206 pKa = 8.1SQKK209 pKa = 8.53HH210 pKa = 3.77TAPRR214 pKa = 11.84PKK216 pKa = 9.77HH217 pKa = 5.0PKK219 pKa = 8.67PRR221 pKa = 11.84KK222 pKa = 8.0CAGRR226 pKa = 11.84SALGQTGLRR235 pKa = 11.84TPNPRR240 pKa = 11.84KK241 pKa = 9.78KK242 pKa = 10.24QPPKK246 pKa = 9.98NRR248 pKa = 11.84ARR250 pKa = 11.84PRR252 pKa = 11.84RR253 pKa = 11.84AFPADD258 pKa = 3.1TKK260 pKa = 10.52QRR262 pKa = 11.84SRR264 pKa = 11.84ARR266 pKa = 11.84AGSSQRR272 pKa = 11.84IPKK275 pKa = 8.64GHH277 pKa = 7.57KK278 pKa = 9.21SRR280 pKa = 11.84KK281 pKa = 7.71SS282 pKa = 3.17

Molecular weight: 31.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

82

0

82

35689

77

2505

435.2

48.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.094 ± 0.202

2.88 ± 0.195

4.62 ± 0.101

5.114 ± 0.157

4.363 ± 0.166

5.167 ± 0.251

2.88 ± 0.127

6.218 ± 0.277

5.548 ± 0.214

10.39 ± 0.263

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.634 ± 0.131

4.36 ± 0.142

6.136 ± 0.318

4.046 ± 0.142

4.122 ± 0.245

8.235 ± 0.281

6.901 ± 0.276

5.898 ± 0.272

1.132 ± 0.073

3.262 ± 0.119
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski