Trametes versicolor (strain FP-101664) (White-rot fungus) (Coriolus versicolor)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Polyporaceae; Trametes; Trametes versicolor

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1022 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R7S7K5|R7S7K5_TRAVS Phosphoglucomutase OS=Trametes versicolor (strain FP-101664) OX=717944 GN=TRAVEDRAFT_157183 PE=3 SV=1
LL1 pKa = 7.11LATIISLFFASAPVGAFAVLQIDD24 pKa = 4.33TPSPAPTQCAPAILQWSGGAPPYY47 pKa = 10.34FLAIVGTGDD56 pKa = 4.19LAVALQRR63 pKa = 11.84YY64 pKa = 9.23DD65 pKa = 3.75GLFDD69 pKa = 4.42TSFLWSTNITARR81 pKa = 11.84TSIALTVTDD90 pKa = 3.5VTGTLAQSAPFIIHH104 pKa = 6.14SSSDD108 pKa = 3.25ISCLEE113 pKa = 3.78SSVPSSSDD121 pKa = 2.41ISRR124 pKa = 11.84VLDD127 pKa = 3.35STTFEE132 pKa = 4.81ASTSMFPAGITAGASAGVSGGAGATAVATAGVV164 pKa = 3.56

Molecular weight: 16.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R7S788|R7S788_TRAVS Nitric oxide dioxygenase OS=Trametes versicolor (strain FP-101664) OX=717944 GN=TRAVEDRAFT_136661 PE=3 SV=1
MM1 pKa = 7.8PSLRR5 pKa = 11.84LPFSCMALSLLDD17 pKa = 3.47GHH19 pKa = 6.85TDD21 pKa = 3.31TSSPAALAAHH31 pKa = 6.05TRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84PSPASSTLPEE45 pKa = 4.05SLAPYY50 pKa = 7.53STPLDD55 pKa = 4.16DD56 pKa = 3.89PTTPRR61 pKa = 11.84TSLRR65 pKa = 11.84LWDD68 pKa = 3.73LHH70 pKa = 6.37SALSFALLDD79 pKa = 3.89VLDD82 pKa = 4.52VPAAPSLGQQAGLASRR98 pKa = 11.84KK99 pKa = 5.27TTPFGAANLARR110 pKa = 11.84IMHH113 pKa = 7.15RR114 pKa = 11.84STPRR118 pKa = 11.84PQRR121 pKa = 11.84AASGKK126 pKa = 8.05NWQVLASYY134 pKa = 7.95STSWDD139 pKa = 3.07RR140 pKa = 11.84LRR142 pKa = 11.84ALTSTGSRR150 pKa = 11.84KK151 pKa = 9.33NASDD155 pKa = 3.95PRR157 pKa = 11.84SCSQTRR163 pKa = 11.84IWAHH167 pKa = 6.0HH168 pKa = 5.43GPNRR172 pKa = 11.84RR173 pKa = 11.84RR174 pKa = 11.84AICAANTDD182 pKa = 3.56SCDD185 pKa = 3.45ARR187 pKa = 11.84QHH189 pKa = 5.33SQHH192 pKa = 6.24TSSGIQPAYY201 pKa = 10.48RR202 pKa = 11.84PGSPPAPKK210 pKa = 9.03TANTHH215 pKa = 4.34HH216 pKa = 7.43TYY218 pKa = 8.71THH220 pKa = 6.17TCQTILHH227 pKa = 7.06ALQDD231 pKa = 3.51VALAPKK237 pKa = 10.11AVADD241 pKa = 3.98RR242 pKa = 11.84CFTILII248 pKa = 4.4

Molecular weight: 26.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1022

0

1022

359438

49

3380

351.7

38.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.894 ± 0.087

1.34 ± 0.034

5.96 ± 0.064

5.916 ± 0.08

3.52 ± 0.054

6.47 ± 0.075

2.742 ± 0.04

4.323 ± 0.054

3.904 ± 0.065

9.022 ± 0.079

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.064 ± 0.033

2.923 ± 0.038

6.912 ± 0.1

3.593 ± 0.053

6.934 ± 0.069

7.803 ± 0.098

6.029 ± 0.061

6.49 ± 0.062

1.535 ± 0.031

2.628 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski