Acinetobacter marinus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2744 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G6MZ23|A0A1G6MZ23_9GAMM 3-deoxy-D-manno-octulosonic acid transferase OS=Acinetobacter marinus OX=281375 GN=SAMN05421749_10862 PE=3 SV=1
MM1 pKa = 7.49NKK3 pKa = 8.39LTLATAILAASSSFAMVNANAYY25 pKa = 8.44QFEE28 pKa = 4.48VGAGAGYY35 pKa = 10.66VDD37 pKa = 5.17PDD39 pKa = 3.76NGDD42 pKa = 3.38SGSAFDD48 pKa = 5.98LGGTYY53 pKa = 10.36YY54 pKa = 10.8FNPVEE59 pKa = 4.83DD60 pKa = 4.13KK61 pKa = 10.88NAPLAEE67 pKa = 3.93AAFVNRR73 pKa = 11.84ASNVHH78 pKa = 6.42AGATFQDD85 pKa = 3.82QGDD88 pKa = 4.76LDD90 pKa = 4.4TNTYY94 pKa = 9.2GAGVEE99 pKa = 4.18YY100 pKa = 9.69FVPNSNFYY108 pKa = 11.16VSGDD112 pKa = 3.31IAKK115 pKa = 9.37TNYY118 pKa = 9.93EE119 pKa = 4.2YY120 pKa = 11.32DD121 pKa = 4.39DD122 pKa = 4.92ADD124 pKa = 3.62IDD126 pKa = 4.25NDD128 pKa = 3.56LTTYY132 pKa = 9.98SAEE135 pKa = 4.02VGYY138 pKa = 10.76LPVPNLLIAVGARR151 pKa = 11.84GWDD154 pKa = 3.41ADD156 pKa = 4.56DD157 pKa = 5.94DD158 pKa = 5.12DD159 pKa = 6.13GVDD162 pKa = 3.22PTLRR166 pKa = 11.84AKK168 pKa = 10.53YY169 pKa = 8.57VTQIGDD175 pKa = 3.32NAVNLEE181 pKa = 3.98AGAAFGDD188 pKa = 3.54LDD190 pKa = 4.55EE191 pKa = 5.29YY192 pKa = 11.76NLAADD197 pKa = 3.83YY198 pKa = 10.78FIDD201 pKa = 3.5NSFSVGADD209 pKa = 3.32YY210 pKa = 11.33YY211 pKa = 11.85SNDD214 pKa = 3.33LTDD217 pKa = 3.57NSEE220 pKa = 4.04FGINARR226 pKa = 11.84KK227 pKa = 9.54FITQNTSLEE236 pKa = 4.06GRR238 pKa = 11.84VGFGDD243 pKa = 4.34TNDD246 pKa = 3.31NDD248 pKa = 3.93YY249 pKa = 11.66NSFGIAAKK257 pKa = 10.38HH258 pKa = 5.54RR259 pKa = 11.84FF260 pKa = 3.48

Molecular weight: 27.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G6NXF0|A0A1G6NXF0_9GAMM Uncharacterized protein OS=Acinetobacter marinus OX=281375 GN=SAMN05421749_11142 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.55RR3 pKa = 11.84TFQPSEE9 pKa = 3.97LKK11 pKa = 10.13RR12 pKa = 11.84KK13 pKa = 8.98RR14 pKa = 11.84VHH16 pKa = 6.36GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4AGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.18GRR39 pKa = 11.84HH40 pKa = 5.1SLTVV44 pKa = 3.06

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2744

0

2744

866506

31

1998

315.8

35.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.059 ± 0.054

0.957 ± 0.016

5.658 ± 0.04

5.649 ± 0.051

4.141 ± 0.037

6.39 ± 0.05

2.521 ± 0.029

6.532 ± 0.035

5.123 ± 0.04

10.147 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.602 ± 0.026

4.27 ± 0.034

3.855 ± 0.025

5.957 ± 0.055

4.486 ± 0.037

6.207 ± 0.039

5.389 ± 0.044

6.597 ± 0.039

1.254 ± 0.018

3.205 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski