Xanthomonas phage XacN1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 459 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A292GIX2|A0A292GIX2_9CAUD Predicted ORF OS=Xanthomonas phage XacN1 OX=2042251 PE=4 SV=1
MM1 pKa = 7.1SQRR4 pKa = 11.84ISDD7 pKa = 4.28LTPVSSIAGDD17 pKa = 3.63EE18 pKa = 4.15LVEE21 pKa = 4.16VAVPNSEE28 pKa = 4.19SPTGYY33 pKa = 9.94VSRR36 pKa = 11.84SASTSLFGGGGGLPYY51 pKa = 10.72RR52 pKa = 11.84FTFEE56 pKa = 5.23INDD59 pKa = 3.64EE60 pKa = 4.77PIGSDD65 pKa = 4.79LSFQLYY71 pKa = 10.06LEE73 pKa = 4.76KK74 pKa = 11.09GQFDD78 pKa = 3.82STAFRR83 pKa = 11.84PNADD87 pKa = 3.92SDD89 pKa = 4.3PDD91 pKa = 4.35GDD93 pKa = 3.72WTLATAIMNFNAIAGFHH110 pKa = 6.53FSSEE114 pKa = 4.52DD115 pKa = 3.16NFQFYY120 pKa = 10.94AFSPLNSSVWVNKK133 pKa = 9.72MGGALGSGADD143 pKa = 3.63SDD145 pKa = 4.95ADD147 pKa = 3.44QLRR150 pKa = 11.84WGTFNNSNDD159 pKa = 3.12LSIYY163 pKa = 9.44QIPDD167 pKa = 3.16NYY169 pKa = 10.31PSSNYY174 pKa = 9.27MNNTPVIAPVEE185 pKa = 4.29VYY187 pKa = 10.69EE188 pKa = 5.28DD189 pKa = 4.2GNFGPDD195 pKa = 3.09GSIVIRR201 pKa = 11.84FRR203 pKa = 11.84VVSPYY208 pKa = 10.6NGWGTYY214 pKa = 8.91PQTFSLKK221 pKa = 10.2GYY223 pKa = 10.53ADD225 pKa = 3.21INMAFSNFYY234 pKa = 10.67RR235 pKa = 11.84PAA237 pKa = 5.35

Molecular weight: 25.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A292GI63|A0A292GI63_9CAUD Predicted ORF OS=Xanthomonas phage XacN1 OX=2042251 PE=4 SV=1
MM1 pKa = 7.73SIEE4 pKa = 4.08ATIMGYY10 pKa = 7.79FHH12 pKa = 7.55EE13 pKa = 4.93YY14 pKa = 9.34DD15 pKa = 3.25AKK17 pKa = 11.09ARR19 pKa = 11.84ALYY22 pKa = 8.74PAYY25 pKa = 10.18AARR28 pKa = 11.84PVPKK32 pKa = 10.29VSFFAKK38 pKa = 10.09GRR40 pKa = 11.84MNGWAKK46 pKa = 9.8QGSWEE51 pKa = 4.32VQFNTHH57 pKa = 6.11NASQVPEE64 pKa = 4.1EE65 pKa = 3.93FRR67 pKa = 11.84NTVSHH72 pKa = 7.09EE73 pKa = 3.78IAHH76 pKa = 5.65MVDD79 pKa = 3.0YY80 pKa = 10.9ALRR83 pKa = 11.84GRR85 pKa = 11.84SGHH88 pKa = 5.59DD89 pKa = 3.69RR90 pKa = 11.84IWKK93 pKa = 9.55AIHH96 pKa = 6.61RR97 pKa = 11.84SLGGTGTRR105 pKa = 11.84CSQYY109 pKa = 10.76GITVKK114 pKa = 10.43RR115 pKa = 11.84GRR117 pKa = 11.84VKK119 pKa = 10.93NEE121 pKa = 3.27YY122 pKa = 10.35LYY124 pKa = 11.19RR125 pKa = 11.84NANGAEE131 pKa = 3.96TWAGPKK137 pKa = 9.38HH138 pKa = 5.55HH139 pKa = 7.27AAMQRR144 pKa = 11.84CSIAGIRR151 pKa = 11.84NRR153 pKa = 11.84SGQVFNRR160 pKa = 11.84NDD162 pKa = 2.8WTGQRR167 pKa = 11.84RR168 pKa = 11.84TIGG171 pKa = 3.22

Molecular weight: 19.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

459

0

459

96337

35

3313

209.9

23.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.473 ± 0.136

0.949 ± 0.049

6.409 ± 0.125

6.472 ± 0.216

4.389 ± 0.086

6.528 ± 0.154

2.005 ± 0.098

5.875 ± 0.087

6.222 ± 0.249

7.594 ± 0.163

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.523 ± 0.078

5.122 ± 0.116

4.625 ± 0.185

3.439 ± 0.094

4.773 ± 0.113

6.078 ± 0.165

7.095 ± 0.408

6.775 ± 0.116

1.487 ± 0.06

4.167 ± 0.097
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski