Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) (Oceanicola batsensis)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudooceanicola; Pseudooceanicola batsensis

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4193 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A3U2A6|A3U2A6_PSEBH Uncharacterized protein OS=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) OX=252305 GN=OB2597_14721 PE=4 SV=1
MM1 pKa = 7.28TYY3 pKa = 10.3YY4 pKa = 10.25YY5 pKa = 10.86SKK7 pKa = 9.73YY8 pKa = 10.4SYY10 pKa = 10.36YY11 pKa = 10.69NKK13 pKa = 10.02HH14 pKa = 6.22SYY16 pKa = 9.9SEE18 pKa = 4.67KK19 pKa = 9.5KK20 pKa = 10.56YY21 pKa = 9.55EE22 pKa = 3.68WTAYY26 pKa = 9.56TEE28 pKa = 4.24ADD30 pKa = 4.17LLGDD34 pKa = 4.14HH35 pKa = 6.7NGKK38 pKa = 10.62SIDD41 pKa = 4.1CGDD44 pKa = 4.1TFPMPGSATVCMSTYY59 pKa = 11.24DD60 pKa = 3.41NDD62 pKa = 4.46GYY64 pKa = 11.58LSGDD68 pKa = 3.77SSWWSDD74 pKa = 3.98DD75 pKa = 3.22KK76 pKa = 11.58ATDD79 pKa = 3.49STGQKK84 pKa = 10.64AYY86 pKa = 9.89IDD88 pKa = 3.86GGRR91 pKa = 11.84EE92 pKa = 3.85GGQLYY97 pKa = 10.59AEE99 pKa = 4.51QYY101 pKa = 10.17HH102 pKa = 5.26VLKK105 pKa = 10.99GSDD108 pKa = 2.72GKK110 pKa = 11.04YY111 pKa = 9.66YY112 pKa = 10.4YY113 pKa = 10.48LIEE116 pKa = 5.39IEE118 pKa = 4.3VEE120 pKa = 4.51GYY122 pKa = 8.91DD123 pKa = 4.73APGKK127 pKa = 10.39GDD129 pKa = 4.38DD130 pKa = 3.63YY131 pKa = 10.77FTFYY135 pKa = 11.33GKK137 pKa = 10.21VPPAGVEE144 pKa = 4.07LEE146 pKa = 4.41VVSTKK151 pKa = 10.66NVWGCMIDD159 pKa = 3.83YY160 pKa = 9.76RR161 pKa = 11.84CLGAGDD167 pKa = 4.18KK168 pKa = 10.97APEE171 pKa = 3.92NTPPEE176 pKa = 4.22FTNDD180 pKa = 3.06PKK182 pKa = 11.08YY183 pKa = 11.24GKK185 pKa = 9.6ICIDD189 pKa = 3.57EE190 pKa = 4.36NSTFVIDD197 pKa = 5.92LNAKK201 pKa = 10.32DD202 pKa = 5.14DD203 pKa = 4.9DD204 pKa = 5.09GDD206 pKa = 3.77TLTYY210 pKa = 10.19EE211 pKa = 4.12IVGGEE216 pKa = 4.04DD217 pKa = 3.24ADD219 pKa = 3.8KK220 pKa = 11.4FEE222 pKa = 5.83IDD224 pKa = 3.76AEE226 pKa = 4.31TGEE229 pKa = 5.15LRR231 pKa = 11.84FKK233 pKa = 10.7DD234 pKa = 3.5APDD237 pKa = 3.61YY238 pKa = 10.46EE239 pKa = 4.33NPTDD243 pKa = 3.58KK244 pKa = 11.67GEE246 pKa = 4.49DD247 pKa = 2.99NVYY250 pKa = 9.43EE251 pKa = 4.36VKK253 pKa = 11.08VKK255 pKa = 10.93VSDD258 pKa = 3.91GNGGEE263 pKa = 4.35DD264 pKa = 3.28TTKK267 pKa = 10.99LKK269 pKa = 11.1VCVEE273 pKa = 4.21DD274 pKa = 5.08VEE276 pKa = 4.48EE277 pKa = 4.05QTGKK281 pKa = 10.79CIVIEE286 pKa = 4.29AEE288 pKa = 5.56DD289 pKa = 3.47MCEE292 pKa = 3.73WGFSKK297 pKa = 10.54AWGCDD302 pKa = 3.01ASGGKK307 pKa = 8.94LVKK310 pKa = 10.36LNCAGGQGKK319 pKa = 9.15LWTTFDD325 pKa = 4.32GPSGTYY331 pKa = 9.97DD332 pKa = 3.39FKK334 pKa = 11.13IYY336 pKa = 10.67AQDD339 pKa = 3.66EE340 pKa = 4.26NDD342 pKa = 3.94GQSKK346 pKa = 10.34LKK348 pKa = 10.35IYY350 pKa = 10.64INGEE354 pKa = 3.55FKK356 pKa = 10.83GYY358 pKa = 10.25IKK360 pKa = 10.66LDD362 pKa = 3.75RR363 pKa = 11.84DD364 pKa = 3.6SDD366 pKa = 4.2GSGSNHH372 pKa = 5.05GTFSTFVLEE381 pKa = 5.51DD382 pKa = 3.22IEE384 pKa = 4.45INKK387 pKa = 10.01GDD389 pKa = 4.04TIKK392 pKa = 10.39IYY394 pKa = 11.12ADD396 pKa = 3.73GDD398 pKa = 3.81CNEE401 pKa = 4.25YY402 pKa = 10.74VRR404 pKa = 11.84IDD406 pKa = 3.95KK407 pKa = 10.79IEE409 pKa = 3.96LCKK412 pKa = 10.39DD413 pKa = 3.68DD414 pKa = 5.18KK415 pKa = 11.23PLGAIGDD422 pKa = 4.4TVWYY426 pKa = 8.3DD427 pKa = 3.24TDD429 pKa = 4.31RR430 pKa = 11.84DD431 pKa = 4.06GVQDD435 pKa = 3.98DD436 pKa = 4.67GEE438 pKa = 5.62AGVEE442 pKa = 3.96NVTVNLLNGAGVVIATQMTDD462 pKa = 2.77VNGNYY467 pKa = 10.19LFEE470 pKa = 4.29EE471 pKa = 4.91LEE473 pKa = 4.18AGDD476 pKa = 3.71YY477 pKa = 10.39KK478 pKa = 11.41VEE480 pKa = 4.35FEE482 pKa = 4.79LPDD485 pKa = 3.65GNFVFTTQDD494 pKa = 2.99AGSDD498 pKa = 3.69DD499 pKa = 5.24AVDD502 pKa = 3.86SDD504 pKa = 4.87ADD506 pKa = 3.95TTTGLTDD513 pKa = 4.08TIALGEE519 pKa = 4.5GEE521 pKa = 4.53TNLTVDD527 pKa = 4.42AGLYY531 pKa = 10.27DD532 pKa = 4.65PNDD535 pKa = 3.82HH536 pKa = 7.55PEE538 pKa = 4.23PTDD541 pKa = 4.26DD542 pKa = 5.03AAKK545 pKa = 9.4TCADD549 pKa = 3.59EE550 pKa = 4.55EE551 pKa = 4.54KK552 pKa = 10.28TVDD555 pKa = 3.62VLANDD560 pKa = 3.87SDD562 pKa = 4.66PNGDD566 pKa = 3.56TLTITHH572 pKa = 6.58VDD574 pKa = 3.41GQAITEE580 pKa = 4.31GGEE583 pKa = 4.21VTTSAGTLVKK593 pKa = 10.61LLGGMLVVDD602 pKa = 5.04GEE604 pKa = 4.36DD605 pKa = 3.26AYY607 pKa = 10.77EE608 pKa = 4.38DD609 pKa = 4.07LDD611 pKa = 3.87IAEE614 pKa = 5.08HH615 pKa = 6.49AMEE618 pKa = 5.73DD619 pKa = 2.92ISYY622 pKa = 8.82TVSDD626 pKa = 4.02GMGGSATANLEE637 pKa = 3.95MTFCGDD643 pKa = 3.23ANTVEE648 pKa = 4.56SFVGYY653 pKa = 9.12MPEE656 pKa = 4.01TVSYY660 pKa = 10.49KK661 pKa = 10.56VADD664 pKa = 4.0GLRR667 pKa = 11.84NDD669 pKa = 3.84PYY671 pKa = 11.27EE672 pKa = 4.36DD673 pKa = 2.95VGYY676 pKa = 10.43DD677 pKa = 3.36ILITEE682 pKa = 4.42SDD684 pKa = 3.34NGRR687 pKa = 11.84LDD689 pKa = 3.61GVEE692 pKa = 4.57FTAAYY697 pKa = 10.25CLDD700 pKa = 3.88FNRR703 pKa = 11.84SITTGADD710 pKa = 3.02YY711 pKa = 11.21DD712 pKa = 4.06SAAEE716 pKa = 3.98LDD718 pKa = 3.11GDD720 pKa = 3.59MFVFNDD726 pKa = 3.62DD727 pKa = 3.57TASSVLLASQNGVNGAALDD746 pKa = 3.94NVNEE750 pKa = 4.4INWILNQDD758 pKa = 3.9FEE760 pKa = 5.59SDD762 pKa = 3.41GTGSVDD768 pKa = 3.33GKK770 pKa = 10.28FSGWEE775 pKa = 3.52VQYY778 pKa = 10.94AIWEE782 pKa = 4.26LTNNFPSDD790 pKa = 3.29AALNATPSNGQVEE803 pKa = 4.61DD804 pKa = 2.8VDD806 pKa = 4.88YY807 pKa = 10.75IVSRR811 pKa = 11.84AISEE815 pKa = 4.66GYY817 pKa = 10.39DD818 pKa = 3.35FEE820 pKa = 7.23AGVGDD825 pKa = 4.54IIGLVITPDD834 pKa = 3.23PVTAQNAQPFLVGVEE849 pKa = 4.09FEE851 pKa = 5.22TYY853 pKa = 10.71DD854 pKa = 3.8CLCC857 pKa = 4.56

Molecular weight: 92.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A3TXB8|A3TXB8_PSEBH Uncharacterized protein OS=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) OX=252305 GN=OB2597_02622 PE=4 SV=1
MM1 pKa = 7.61ILRR4 pKa = 11.84RR5 pKa = 11.84VLSRR9 pKa = 11.84GLKK12 pKa = 10.02AGMGRR17 pKa = 11.84MAKK20 pKa = 10.32GDD22 pKa = 3.65GQGPQSKK29 pKa = 9.75RR30 pKa = 11.84ARR32 pKa = 11.84QTARR36 pKa = 11.84RR37 pKa = 11.84ARR39 pKa = 11.84KK40 pKa = 8.67AARR43 pKa = 11.84LMRR46 pKa = 11.84RR47 pKa = 11.84NGRR50 pKa = 11.84LL51 pKa = 3.09

Molecular weight: 5.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4193

0

4193

1317978

19

12228

314.3

34.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.325 ± 0.062

0.836 ± 0.018

6.337 ± 0.07

6.265 ± 0.033

3.618 ± 0.028

9.036 ± 0.055

2.025 ± 0.026

5.02 ± 0.028

2.706 ± 0.038

9.891 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.712 ± 0.027

2.407 ± 0.025

5.175 ± 0.034

2.953 ± 0.02

7.332 ± 0.058

5.0 ± 0.028

5.521 ± 0.045

7.334 ± 0.03

1.319 ± 0.016

2.189 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski