Campylobacter volucris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1515 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C8KZB2|A0A5C8KZB2_9PROT Translation initiation factor IF-3 OS=Campylobacter volucris OX=1031542 GN=infC PE=3 SV=1
MM1 pKa = 7.46SLLITRR7 pKa = 11.84DD8 pKa = 3.95CISCDD13 pKa = 3.11ACRR16 pKa = 11.84EE17 pKa = 4.02EE18 pKa = 5.37CPDD21 pKa = 3.25EE22 pKa = 5.52AIYY25 pKa = 11.1DD26 pKa = 3.7NDD28 pKa = 4.81PIYY31 pKa = 11.14VIDD34 pKa = 5.27PDD36 pKa = 4.29LCTEE40 pKa = 4.33CVNEE44 pKa = 4.25FSEE47 pKa = 4.52PACIVACPVDD57 pKa = 5.49CIIPDD62 pKa = 3.95PDD64 pKa = 3.37NVEE67 pKa = 4.49SIEE70 pKa = 3.95EE71 pKa = 3.83LRR73 pKa = 11.84LKK75 pKa = 10.54HH76 pKa = 6.43KK77 pKa = 11.02NKK79 pKa = 10.57ANN81 pKa = 3.47

Molecular weight: 9.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C8L129|A0A5C8L129_9PROT DNA-deoxyinosine glycosylase OS=Campylobacter volucris OX=1031542 GN=FVD15_07445 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.09QPHH8 pKa = 5.34NTPKK12 pKa = 10.47KK13 pKa = 7.58RR14 pKa = 11.84THH16 pKa = 5.93GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.07TKK25 pKa = 10.39NGRR28 pKa = 11.84KK29 pKa = 9.3VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1515

0

1515

470377

24

1761

310.5

35.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.515 ± 0.056

1.26 ± 0.024

5.436 ± 0.047

6.857 ± 0.064

5.995 ± 0.058

5.274 ± 0.065

1.644 ± 0.025

9.242 ± 0.057

9.767 ± 0.07

10.496 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.208 ± 0.03

6.548 ± 0.056

2.583 ± 0.031

3.352 ± 0.037

2.739 ± 0.039

6.327 ± 0.046

4.047 ± 0.043

5.16 ± 0.05

0.617 ± 0.017

3.935 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski